Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D03
         (652 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B5564 Cluster: PREDICTED: similar to mediator c...    59   1e-07
UniRef50_UPI0000D560BE Cluster: PREDICTED: similar to CG4184-PA;...    55   2e-06
UniRef50_Q9Y149 Cluster: Mediator of RNA polymerase II transcrip...    53   7e-06
UniRef50_Q5TP13 Cluster: Mediator of RNA polymerase II transcrip...    52   1e-05
UniRef50_Q4SUS1 Cluster: Chromosome undetermined SCAF13844, whol...    39   0.090
UniRef50_Q9NXY2 Cluster: FLJ00003 protein; n=1; Homo sapiens|Rep...    38   0.21 
UniRef50_Q96RN5 Cluster: Mediator of RNA polymerase II transcrip...    38   0.21 
UniRef50_Q3TLG6 Cluster: Mammary gland RCB-0527 Jyg-MC(B) cDNA, ...    38   0.28 
UniRef50_Q6LFP0 Cluster: Putative uncharacterized protein; n=1; ...    35   1.9  
UniRef50_Q86VM9 Cluster: Conserved nuclear protein NHN1; n=36; T...    33   5.9  

>UniRef50_UPI00015B5564 Cluster: PREDICTED: similar to mediator
           complex, subunit, putative; n=1; Nasonia
           vitripennis|Rep: PREDICTED: similar to mediator complex,
           subunit, putative - Nasonia vitripennis
          Length = 622

 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 25/39 (64%), Positives = 32/39 (82%)
 Frame = +1

Query: 43  FLHRVERAMDARCARLPKSCSVGQLLDAWEMSVRQACAP 159
           +L  V++ +DAR ++LPK  SV QLLD+WEMSVRQACAP
Sbjct: 537 YLSAVQKGLDARLSKLPKMYSVSQLLDSWEMSVRQACAP 575


>UniRef50_UPI0000D560BE Cluster: PREDICTED: similar to CG4184-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG4184-PA - Tribolium castaneum
          Length = 608

 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 28/50 (56%), Positives = 31/50 (62%)
 Frame = +1

Query: 43  FLHRVERAMDARCARLPKSCSVGQLLDAWEMSVRQACAPNPVEYLPVPAL 192
           FL  V+ A+ AR  +LPK  SV QLLD WEMSVRQA AP  V   P   L
Sbjct: 556 FLSAVQTALLARIKKLPKYFSVSQLLDTWEMSVRQASAPTSVPVFPTTLL 605


>UniRef50_Q9Y149 Cluster: Mediator of RNA polymerase II
           transcription subunit 15; n=1; Drosophila
           melanogaster|Rep: Mediator of RNA polymerase II
           transcription subunit 15 - Drosophila melanogaster
           (Fruit fly)
          Length = 749

 Score = 52.8 bits (121), Expect = 7e-06
 Identities = 22/39 (56%), Positives = 31/39 (79%)
 Frame = +1

Query: 43  FLHRVERAMDARCARLPKSCSVGQLLDAWEMSVRQACAP 159
           FL  V++A+ AR ++LPK+ S+  LLD WEM+VRQAC+P
Sbjct: 695 FLQTVQQALIARISKLPKNYSLSHLLDTWEMAVRQACSP 733


>UniRef50_Q5TP13 Cluster: Mediator of RNA polymerase II
           transcription subunit 15; n=4; Endopterygota|Rep:
           Mediator of RNA polymerase II transcription subunit 15 -
           Anopheles gambiae (African malaria mosquito)
          Length = 750

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 23/46 (50%), Positives = 31/46 (67%)
 Frame = +1

Query: 43  FLHRVERAMDARCARLPKSCSVGQLLDAWEMSVRQACAPNPVEYLP 180
           FL  V++++ AR  +LP   ++  LLD WEMSVRQAC+PNP    P
Sbjct: 696 FLILVQKSLMARICKLPGLFTLSHLLDTWEMSVRQACSPNPTIVAP 741


>UniRef50_Q4SUS1 Cluster: Chromosome undetermined SCAF13844, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF13844,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 804

 Score = 39.1 bits (87), Expect = 0.090
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +1

Query: 37  SAFLHRVERAMDARCARLPKSCSVGQLLDAWEMSVRQAC 153
           ++FL +V R M ++  +LP   S+ +LL+ W  SV+QAC
Sbjct: 762 NSFLQKVHRTMTSKLLQLPDKHSLTELLNTWAQSVQQAC 800


>UniRef50_Q9NXY2 Cluster: FLJ00003 protein; n=1; Homo sapiens|Rep:
           FLJ00003 protein - Homo sapiens (Human)
          Length = 235

 Score = 37.9 bits (84), Expect = 0.21
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +1

Query: 43  FLHRVERAMDARCARLPKSCSVGQLLDAWEMSVRQAC 153
           FL  V R M +R  +LP   SV  LL+ W  SV QAC
Sbjct: 195 FLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQAC 231


>UniRef50_Q96RN5 Cluster: Mediator of RNA polymerase II
           transcription subunit 15; n=30; Euteleostomi|Rep:
           Mediator of RNA polymerase II transcription subunit 15 -
           Homo sapiens (Human)
          Length = 788

 Score = 37.9 bits (84), Expect = 0.21
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +1

Query: 43  FLHRVERAMDARCARLPKSCSVGQLLDAWEMSVRQAC 153
           FL  V R M +R  +LP   SV  LL+ W  SV QAC
Sbjct: 748 FLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQAC 784


>UniRef50_Q3TLG6 Cluster: Mammary gland RCB-0527 Jyg-MC(B) cDNA,
           RIKEN full-length enriched library, clone:G930050F03
           product:positive cofactor 2, multiprotein complex,
           glutamine/Q-rich-associated protein, full insert
           sequence; n=13; Tetrapoda|Rep: Mammary gland RCB-0527
           Jyg-MC(B) cDNA, RIKEN full-length enriched library,
           clone:G930050F03 product:positive cofactor 2,
           multiprotein complex, glutamine/Q-rich-associated
           protein, full insert sequence - Mus musculus (Mouse)
          Length = 639

 Score = 37.5 bits (83), Expect = 0.28
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +1

Query: 43  FLHRVERAMDARCARLPKSCSVGQLLDAWEMSVRQAC 153
           FL  V R M +R  +LP   SV  LL+ W  S+ QAC
Sbjct: 599 FLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSIHQAC 635


>UniRef50_Q6LFP0 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1297

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 23/85 (27%), Positives = 41/85 (48%)
 Frame = +2

Query: 239 NDLN*SI*NDIEYNRFCTKLLKFVPLQGKYPDSSSDNLRSVCSNAHCIFPLDYGRNDFQN 418
           N++N +I N+  YN   + ++       KY  +  D  R++ +N   IF ++YG N+  N
Sbjct: 596 NNMNNNIINNQFYNNVNSSMVNNTYGLPKY--NKEDMSRNIMNNMGGIFSMNYGNNNNNN 653

Query: 419 DEFENRNLKNRYSIKPKILNLSNDV 493
           +   N N  N  +      N+SN +
Sbjct: 654 NNNNNNNNNNNNNNNIYDGNISNSI 678


>UniRef50_Q86VM9 Cluster: Conserved nuclear protein NHN1; n=36;
           Tetrapoda|Rep: Conserved nuclear protein NHN1 - Homo
           sapiens (Human)
          Length = 953

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = +3

Query: 84  QATKKLFCGPTPGRVGDERAAGVRTQPGRVPAGPRARALSG 206
           QATK     P P + GD R A  + +P R P  PR R LSG
Sbjct: 648 QATKTTAPVPEPTKPGDPREARRKERPARTP--PRRRTLSG 686


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 501,457,900
Number of Sequences: 1657284
Number of extensions: 9375832
Number of successful extensions: 26327
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26312
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)