Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D03
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   5.4  
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ...    25   7.2  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   9.5  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 263  NDIEYNRFCTKLLKFVPLQGKYPDSSSDNLRSVCSNAHCIFPLDYGRNDFQNDE 424
            N+IE     + LL+ + L  KY   S   LR V    +C+F +    N+F N+E
Sbjct: 1787 NNIEILDDESNLLRLMSLVEKY---SLPFLRRVALVLYCMFDISLEFNEFSNNE 1837


>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 428 QTHHFGNHFFRSLREKYSEHLSI 360
           QT H GN+ F  ++EK  + L++
Sbjct: 238 QTQHLGNYTFSIIKEKVDDILTV 260


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 49  HRVERAMDARCARLPKSCSVGQLLDAWEMSVRQACAPN 162
           HR  RA+ +R +R PK  SV  ++D       QA   N
Sbjct: 568 HRFHRALRSRFSRSPKKSSVKIVVDNANDDTDQAPTTN 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,180
Number of Sequences: 5004
Number of extensions: 39296
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)