Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D03
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1184 - 25008934-25010076                                         31   1.1  
07_01_0695 + 5251802-5253016                                           30   1.4  
01_05_0444 + 22298490-22298598,22299847-22300108,22302420-223025...    29   3.2  
03_05_0065 + 20450814-20452748                                         28   5.6  
07_03_0264 - 15958690-15958910,15959410-15959484,15959547-159597...    27   9.8  

>08_02_1184 - 25008934-25010076
          Length = 380

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 105 CGPTPGRVGDERAAGVRTQPGRVPAG-PRARALSGIIA 215
           C PT GRV D    G    P   PAG P +  +SG I+
Sbjct: 73  CDPTTGRVADLTLRGEADDPVMAPAGRPASGVMSGYIS 110


>07_01_0695 + 5251802-5253016
          Length = 404

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 299 LKFVPLQG-KYPDSSSDNLRSVCSNAHCIFPLDYGRNDFQND 421
           L++  +QG + P  SS+N+RSV  N    F LDY R    ND
Sbjct: 209 LQWRAIQGPQLPVCSSNNMRSVVINGVAYFLLDYSRLYCSND 250


>01_05_0444 +
           22298490-22298598,22299847-22300108,22302420-22302516,
           22302633-22302647,22302775-22302831,22303481-22303557,
           22303688-22303967
          Length = 298

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 392 LREKYSEHLSILNANCQN*SPGTCLAGGQI-LIVWYKIDCIRYRFR 258
           LRE Y+  LS  +A+ Q   P T L+   +  + WY + C+ Y FR
Sbjct: 75  LRELYNSLLSGESADQQRRRPVTALSPEDLGNVEWYYVVCMTYAFR 120


>03_05_0065 + 20450814-20452748
          Length = 644

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +1

Query: 100 CSVGQLLDAWEMS---VRQACAPNPVEY 174
           CS G+ +DA E+    ++Q C PNPV +
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTF 464


>07_03_0264 -
           15958690-15958910,15959410-15959484,15959547-15959775,
           15960312-15960587,15962109-15962369,15962632-15962781,
           15963555-15963591,15963958-15964024,15964228-15964291,
           15964643-15964812,15965046-15965124,15965576-15965733,
           15965862-15966030,15966531-15966602,15966977-15967018,
           15967245-15967488,15968782-15968963
          Length = 831

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 141 AAGVRTQPGRVPAGPRARALSGIIASVR*EHP 236
           AA   + P  +PA P AR+ S   +SV  E P
Sbjct: 43  AAAAASSPPPLPASPPARSFSSAFSSVHGERP 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,128,197
Number of Sequences: 37544
Number of extensions: 247550
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)