Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D03
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79670.2 68414.m09292 wall-associated kinase, putative simila...    29   3.5  
At1g79670.1 68414.m09291 wall-associated kinase, putative simila...    29   3.5  
At3g61520.1 68416.m06890 pentatricopeptide (PPR) repeat-containi...    27   8.2  

>At1g79670.2 68414.m09292 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 714

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 329 PDSSSDNLRSVCSNAHCIFPLDYGRND-FQNDEFE 430
           P SSS +   +C      FP   GR D F ND +E
Sbjct: 30  PPSSSTSCNRICGGIEIPFPFGIGRRDCFLNDWYE 64


>At1g79670.1 68414.m09291 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 751

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 329 PDSSSDNLRSVCSNAHCIFPLDYGRND-FQNDEFE 430
           P SSS +   +C      FP   GR D F ND +E
Sbjct: 30  PPSSSTSCNRICGGIEIPFPFGIGRRDCFLNDWYE 64


>At3g61520.1 68416.m06890 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 766

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
 Frame = +1

Query: 100 CSVGQLLDAWEMSVR----QACAPNPVEY 174
           C VG+L +A E+ VR    + CAPN V Y
Sbjct: 381 CKVGRLKEAEELLVRMKLEERCAPNAVTY 409


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,716,332
Number of Sequences: 28952
Number of extensions: 199286
Number of successful extensions: 418
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)