Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_D02
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 33 0.27
SB_5795| Best HMM Match : RasGEF (HMM E-Value=5.3e-06) 31 1.1
SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36) 30 1.9
SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4) 29 4.3
SB_33539| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21) 28 7.6
SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38) 28 7.6
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -2
Query: 366 DMWADAGLHVILSDAADKSVRDGESRVYPAVRVHN-GERD-FINDAVNRVTDVLSRRDEK 193
D W A + D + G A R GE D IND N++ +++S R+
Sbjct: 494 DEWETASDVSSDEEPRDSIISYGSPEAETAQREQGTGENDDTINDERNKINEIISNRNPG 553
Query: 192 RERDQDNHGGFV 157
+ NHGG+V
Sbjct: 554 KRVQVTNHGGYV 565
>SB_5795| Best HMM Match : RasGEF (HMM E-Value=5.3e-06)
Length = 155
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 459 VAGNIKQDCLKE*HKTNPLIIFVIFNFVLS 370
V G + +C+KE T+PL++FV N +S
Sbjct: 115 VEGKVHSECIKECRSTSPLLLFVTENATVS 144
>SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +1
Query: 196 LVTSRQYIGDPIDCIVDEIPLAVMDTYCWIYSTFTIPNRLIGRVGKDYVQPGVGPHVEGQ 375
++T Q + DP + I+D+ + T I T +++ G+D + P +
Sbjct: 95 IITGNQVLSDPGEDIIDDYHRRSLATPARISLTIITGKKVLSDSGEDLIDILSDPGEDII 154
Query: 376 DEVKY-HKYYQWVCFVLFFQAILFY 447
D+ + Y +CFV F ++ Y
Sbjct: 155 DDYHWSFDVYMMMCFVFVFGCLVEY 179
>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
Length = 972
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +1
Query: 40 YSRPRPTRRAPAMFDVFGSVKGLLKLDSVCIDNNVFRLHYKATVIILIAFSLLVTSRQYI 219
++ P PT R+P + S+ GL+ + + + R ++ T A++L + ++++
Sbjct: 648 HTPPPPTDRSPVYSHLSTSLTGLITIRAFQAEQAFIRSYHAYTDFHTGAYALNLGIQRWL 707
Query: 220 GDPIDCI-VDEIPLAVMDTYCWIYSTFTIPNRLIG 321
G +D I LAV + + + FTI ++G
Sbjct: 708 GIRLDIISALFFALAVFTSLLTVEAGFTISASVVG 742
>SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4)
Length = 327
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 392 TNIISGFVLCYSFKQSCFMFPATCG-KRGKEAASRCWSWILTVPSLKTSASRVVKSYLST 568
T ++ ++ C FK M + K + S++ VPS +A +VKSYL+
Sbjct: 15 TAMVKSYLNCVPFKTCTAMVISYLNCVPSKTCTAMVISYLNCVPSKTCTA--MVKSYLNC 72
Query: 569 ISTRTCT 589
+ ++TCT
Sbjct: 73 VPSKTCT 79
Score = 27.9 bits (59), Expect = 7.6
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Frame = +2
Query: 299 PSRTDLSAASERITCNPASAHMSKDKTKLNI------TNIISGFVLCYSFKQSCFMFPAT 460
PS+T + + C P+ + + LN T ++ ++ C FK M +
Sbjct: 154 PSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPFKTCTAMVISY 213
Query: 461 CG-KRGKEAASRCWSWILTVPSLKTSASRVVKSYLSTISTRTCT 589
K + S++ VPS KT + V+ SYL+ + ++TCT
Sbjct: 214 LNCVPSKTCTAMAISYLNCVPS-KTCTAMVI-SYLNCVPSKTCT 255
>SB_33539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 390 IFNFVLSFDMWADAGLHVILSDAADKSVRDGESRVYPAVRVHNGERDFIN 241
+FN + +W D S A+KS+R ES Y ++VH +N
Sbjct: 18 LFNNLNDTPLWKDRSFATTFSYVANKSIRKQES--YGLIKVHKKTSKILN 65
>SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 804
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 311 DLSAASERITCNPASAHMSKDKTKLNITNIISGFVLCYSFK 433
++S ++ + +A S+D+ L ITNIIS F+L SF+
Sbjct: 457 EVSKLERKLMKDVGTALHSRDEFSLLITNIISSFLLGKSFE 497
>SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +1
Query: 169 VIILIAFSLLVTSRQYIGDPIDCIVDEIPLAVMDTYCWIYST 294
V+I+ +LL+T Q P++ + +A++DT ++ T
Sbjct: 4 VLIITLLALLITKLQVTASPVEIAHGRVHMAILDTQNFVCQT 45
>SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)
Length = 1080
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 490 KMLVLDLNCPIVEDECKSGRKKLLVD 567
K+ VL+LNC + + KSG K LVD
Sbjct: 220 KLKVLNLNCNSIRSQHKSGLFKALVD 245
>SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)
Length = 1172
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 490 KMLVLDLNCPIVEDECKSGRKKLLVD 567
K+ VL+LNC + + KSG K LVD
Sbjct: 219 KLKVLNLNCNSIRSQHKSGLFKALVD 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,464,123
Number of Sequences: 59808
Number of extensions: 476079
Number of successful extensions: 1337
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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