Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D01
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...   186   1e-49
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   6.7  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score =  186 bits (454), Expect = 1e-49
 Identities = 96/123 (78%), Positives = 97/123 (78%), Gaps = 2/123 (1%)
 Frame = +3

Query: 291 RKQDIGEILQQIMNITDQSLHEAQARKHTLNCHTMKPALFSVLCEIKEKTVLSLXNTQEE 470
           RKQDIGEILQQIMNITDQSL EAQARKHTLNCH MKPALFSVLCEIKEKTVLSL NTQEE
Sbjct: 36  RKQDIGEILQQIMNITDQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSLRNTQEE 95

Query: 471 EPPDPXLMRLDNMLIAEGVXGPXK--XXXXXXXXXXXXXXXEWDNAIEHSDYRAKLAXIX 644
           EPPDP LMRLDNMLIAEGV GP K                 + DNAIEHSDYRAKLA I 
Sbjct: 96  EPPDPQLMRLDNMLIAEGVAGPEKGGGAGAAASGSAAAQAGQPDNAIEHSDYRAKLAQIR 155

Query: 645 QIY 653
           QIY
Sbjct: 156 QIY 158



 Score = 29.9 bits (64), Expect = 0.019
 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +2

Query: 182 MDDPNRMMAH-XGGMMGPQ 235
           MDDP RMM H  GG+M PQ
Sbjct: 1   MDDPGRMMGHTGGGLMPPQ 19


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 465 LECXSEIALSFL*FHRVLKTEQASLYGS 382
           L+C  E   SF+ +HR+L  E   L+ S
Sbjct: 343 LQCQDEKFESFVYYHRIL-GETVDLFNS 369


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,541
Number of Sequences: 336
Number of extensions: 2161
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)