Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D01
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   5.5  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    26   5.5  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 50   VSFFTFTLNFGL-PT*N*KSRTK*VYVIXIRH*SYLCID 163
            ++FF F L   L P    +S+T  VY+  + H  ++C+D
Sbjct: 1493 IAFFFFCLGIMLRPILGDRSKTYGVYLAGVAHFLFVCVD 1531


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +1

Query: 115 ISIRNXNKTLKLFMY*LSRPVSNGRSEPDDGAXRRNDGTAGLMGCLXEKAHQPLKEAKLA 294
           +S RN    L  F   L++  SNG +E DDG  RR   T  +  C     H      +  
Sbjct: 342 VSSRNVEDILNHFQKELTK--SNGETEKDDG--RRRALTKAIHSCAINFPHTAATAIQYL 397

Query: 295 SRTLAKFYNK 324
              ++ F +K
Sbjct: 398 LSHISDFQSK 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,417
Number of Sequences: 5004
Number of extensions: 35180
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)