Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D01
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34229| Best HMM Match : PBX (HMM E-Value=0)                        166   2e-41
SB_24709| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)                  30   1.4  
SB_41374| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_43260| Best HMM Match : Gemini_mov (HMM E-Value=0.94)               29   4.4  

>SB_34229| Best HMM Match : PBX (HMM E-Value=0)
          Length = 313

 Score =  166 bits (403), Expect = 2e-41
 Identities = 81/121 (66%), Positives = 91/121 (75%)
 Frame = +3

Query: 291 RKQDIGEILQQIMNITDQSLHEAQARKHTLNCHTMKPALFSVLCEIKEKTVLSLXNTQEE 470
           RKQDIG+ILQQIM+ITDQSL EAQA+KH LNCH MKPALF+VLCEIKEKTVLS+  +QE+
Sbjct: 10  RKQDIGDILQQIMSITDQSLDEAQAKKHALNCHRMKPALFNVLCEIKEKTVLSIRGSQED 69

Query: 471 EPPDPXLMRLDNMLIAEGVXGPXKXXXXXXXXXXXXXXXEWDNAIEHSDYRAKLAXIXQI 650
           EPPDP LMRLDNML+AEGV GP K                 +N  EHS+YRAKL  I QI
Sbjct: 70  EPPDPQLMRLDNMLLAEGVAGPEKGGAAAAAAAAGVH----ENQAEHSEYRAKLNQIRQI 125

Query: 651 Y 653
           Y
Sbjct: 126 Y 126


>SB_24709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +1

Query: 133 NKTLKLFMY*LSRPVSNGRSEPDDGAXRRNDGTAGLMGCLXEKAHQPLKEAKLA 294
           N+  K  +  +  PV+ G SEP     R +D  AG        AH P+ E+  A
Sbjct: 212 NRANKEALRVVQSPVAPGPSEPQGLRARADDAAAGTARADTPSAHTPVPESNFA 265


>SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)
          Length = 794

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/68 (20%), Positives = 30/68 (44%)
 Frame = +3

Query: 330 NITDQSLHEAQARKHTLNCHTMKPALFSVLCEIKEKTVLSLXNTQEEEPPDPXLMRLDNM 509
           ++ D +  E  + K   +   ++   F  LCE+   ++  +    E+ P D  + +L  +
Sbjct: 724 DVVDGATAEESSEKAKKDAEELRIKAFEQLCEVFPDSIEKILQLLEDNPKDTSVEKLTQL 783

Query: 510 LIAEGVXG 533
           L+ E   G
Sbjct: 784 LLDEETKG 791


>SB_41374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 172 PVSNGRSEPDDGAXRRNDGTAGLMGCLXEKAHQPLKEAKLA 294
           PV+ G SEP     R +D  AG        AH P+ E+  A
Sbjct: 807 PVAPGPSEPQGLRARADDAAAGTARAGTPSAHTPVPESNSA 847


>SB_43260| Best HMM Match : Gemini_mov (HMM E-Value=0.94)
          Length = 294

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 133 NKTLKLFMY*LSRPVSNGRSEPDDGAXRRNDGTAGLMGCLXEKAHQPLKEAKLA 294
           N+  K  +  +  PV  G SEP     R +D  AG        AH P+ E+  A
Sbjct: 71  NRAKKEALRVVQSPVVPGPSEPQGLRARADDAAAGTARADTPSAHTPVPESNSA 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,617,143
Number of Sequences: 59808
Number of extensions: 265813
Number of successful extensions: 591
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)