Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D01
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40935-7|AAA81691.3|  338|Caenorhabditis elegans C.elegans homeo...    95   4e-20
U01303-1|AAC46471.1|  338|Caenorhabditis elegans Ceh-20 protein.       95   4e-20
Z68114-11|CAA92154.1|  329|Caenorhabditis elegans Hypothetical p...    36   0.019

>U40935-7|AAA81691.3|  338|Caenorhabditis elegans C.elegans homeobox
           protein 20 protein.
          Length = 338

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 44/82 (53%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
 Frame = +3

Query: 300 DIGEILQQIMNITDQSLHEAQ-ARKHTLNCHTMKPALFSVLCEIKEKTVLSLXNTQEEEP 476
           ++ E+L  ++ I +Q+L +   A+K  L CH M+ ALF VLCE KEKTVL++ N  +E P
Sbjct: 8   NLSELLDAVLKINEQTLDDNDSAKKQELQCHPMRQALFDVLCETKEKTVLTVRNQVDETP 67

Query: 477 PDPXLMRLDNMLIAEGVXGPXK 542
            DP LMRLDNML+AEGV GP K
Sbjct: 68  EDPQLMRLDNMLVAEGVAGPDK 89


>U01303-1|AAC46471.1|  338|Caenorhabditis elegans Ceh-20 protein.
          Length = 338

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 44/82 (53%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
 Frame = +3

Query: 300 DIGEILQQIMNITDQSLHEAQ-ARKHTLNCHTMKPALFSVLCEIKEKTVLSLXNTQEEEP 476
           ++ E+L  ++ I +Q+L +   A+K  L CH M+ ALF VLCE KEKTVL++ N  +E P
Sbjct: 8   NLSELLDAVLKINEQTLDDNDSAKKQELQCHPMRQALFDVLCETKEKTVLTVRNQVDETP 67

Query: 477 PDPXLMRLDNMLIAEGVXGPXK 542
            DP LMRLDNML+AEGV GP K
Sbjct: 68  EDPQLMRLDNMLVAEGVAGPDK 89


>Z68114-11|CAA92154.1|  329|Caenorhabditis elegans Hypothetical
           protein F17A2.5 protein.
          Length = 329

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
 Frame = +3

Query: 297 QDIGEILQQIMNITDQSL-HEAQAR-KHTLNCHTMKPALFSVLCEIKEKTVLSLXNTQEE 470
           + I ++L +++ ITD ++ +EA  + K  +  +    A+  VL E K K  LS    ++ 
Sbjct: 6   KSIMDLLSEVVKITDMTMDNEAVNKLKPQIKINPFYRAVQDVLVEQKSKIDLSTKMMKDL 65

Query: 471 EPPDPXLMRLDNMLIAEGVXGP 536
           E  +    RLD ML AEGV GP
Sbjct: 66  EAQEND-ERLDTMLKAEGVAGP 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,346,675
Number of Sequences: 27780
Number of extensions: 204610
Number of successful extensions: 447
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)