Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C24
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    27   1.8  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   4.1  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   7.2  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    25   9.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   9.5  

>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 143 NFITNRFLKTYLDIERRLCXRC 78
           NFI  R LKT LDI ++L   C
Sbjct: 597 NFINRRALKTILDIRKQLREHC 618


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
 Frame = +3

Query: 201 WCDQPRLWYVQC-----EAILAPXK----LSDEARYNLVVTKLGKDVVQQVSDILLKPPD 353
           W D PR+W   C     +++    K     S+  + +L  +++ ++VVQ +   L    +
Sbjct: 311 WSDYPRVWSAFCGRLNDKSVACRIKCIEVASNALQNSLATSEIIENVVQMLQSKLADTDE 370

Query: 354 EKKFDTLK--ERL-LKIYEXSXMRQFQKLLXEMELGDQKPSQLLRRMRDLAR 500
           + +  TLK  E+L  + ++     Q  KL+ +  L D+K +  L+ +R L++
Sbjct: 371 KVRVATLKTIEQLTFETFKMQFSVQALKLMGD-RLRDRKLNVRLQAIRTLSQ 421


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
 Frame = +3

Query: 351  DEKKFDTLKERLLKIYEXSXMRQFQKLLXEMELGDQKPSQLLRRMRDLARDKMPD-ETLR 527
            D+K     + +L+K++     +   +   E     +KP + L + +D+ +  M    +L 
Sbjct: 752  DQKAAGRDRLKLIKLHYDHLSQALHEYEREKCFDVRKPYESLFQNQDVQQFYMHSLRSLF 811

Query: 528  IMW--QGHLSAAVRGVLAVCEAK-DLE 599
            +++  + HL  AVRG+L + E   DLE
Sbjct: 812  VVYYYESHLMQAVRGILQILETVIDLE 838


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 449 QLHLXKQFLKLSHXRXFIDF*QTFFQR 369
           ++ L  +++KLSH + F+D    FF +
Sbjct: 358 KIQLRNEYIKLSHQQNFLDDIDDFFSQ 384


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
            Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 445  SWGIRSPLNSCAV*GIWLAIKCPMRPLE 528
            S G +S    C +  IW A+ CP+R L+
Sbjct: 1045 SGGEKSFATICMLLSIWEAMSCPLRCLD 1072


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,169
Number of Sequences: 5004
Number of extensions: 39344
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)