Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C24
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44255| Best HMM Match : RVT_1 (HMM E-Value=7.6e-29)                 31   0.62 
SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_24737| Best HMM Match : KID (HMM E-Value=0.096)                     29   2.5  
SB_2211| Best HMM Match : DUF349 (HMM E-Value=4.4)                     29   3.3  
SB_36383| Best HMM Match : SURF6 (HMM E-Value=1.2)                     28   5.7  
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)                28   5.7  
SB_15517| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)               28   5.7  
SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)                   28   7.6  
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)                    28   7.6  
SB_17356| Best HMM Match : DUF590 (HMM E-Value=0)                      28   7.6  
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_44255| Best HMM Match : RVT_1 (HMM E-Value=7.6e-29)
          Length = 1017

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +3

Query: 267 DEARYNLVVTKLGKDVVQQVSDILLKPPDEKKFDTLKERLLK 392
           + AR+N  V K G+ +   + D L + PDE  + TLKE L++
Sbjct: 108 NRARFNRRVQKPGESIDNFIQD-LYRLPDECNYSTLKEELIR 148


>SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2103

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 204  CDQPR---LWYVQCEAILAPXKLSDEARYNLVVTKLGKDVVQQVSDILLKPPDE 356
            CDQ R   L Y +C+A L   +   + RY  + TK   D  + ++DIL+   DE
Sbjct: 1516 CDQQRKADLCYTRCDADLRDKQRDADLRYTNLDTKANSD-YESMADILIDRKDE 1568


>SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 369 TLKERLLKIYEXSXMRQFQ-KLLXEMELGDQK---PSQLLRRMRDLARDKMPDETLR 527
           TL+ RL  I   + +++F  ++  E ELG  +   P  +LRR    AR+K  DE  R
Sbjct: 683 TLRRRLSSIESINTLKKFAARVRRERELGGPQVEGPRDVLRRFAQKAREKRSDEESR 739


>SB_24737| Best HMM Match : KID (HMM E-Value=0.096)
          Length = 636

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
 Frame = +3

Query: 258 KLSDEARYNLVVTKLGKDVVQQV--SDILLKPPD--EKKFDTLKERLLKIYEXSXMRQFQ 425
           K  D  + N  V +L K++ ++   ++ L+K  +  EK+ D LK  L    +   M + Q
Sbjct: 189 KGGDANKVNARVAELEKELKEKTKSAEKLVKASEKREKEVDALKRALQD--QDQVMEEQQ 246

Query: 426 KLLXEMELGDQKPSQLLRRMRD 491
             L E +LG +  ++ LR +RD
Sbjct: 247 DALTERQLGIESLTEELRTLRD 268


>SB_2211| Best HMM Match : DUF349 (HMM E-Value=4.4)
          Length = 101

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +3

Query: 294 TKLGKDVVQQVSDILLKPP---DEKKFDTLKERLLKIYEXSXMRQFQKLLXEMELGDQKP 464
           TKL K   Q V+D+++      ++++   ++E    + E      F KL     L ++  
Sbjct: 22  TKLRKKEEQIVTDLIVNQANMSEQERNKIIEEHEKHLAELETSMTFNKLRQRQMLEERLA 81

Query: 465 SQLLRRMRDLARDKMPDE 518
           ++  RRM +L RD+  +E
Sbjct: 82  ARRKRRMDELERDQHAEE 99


>SB_36383| Best HMM Match : SURF6 (HMM E-Value=1.2)
          Length = 364

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
 Frame = +3

Query: 330 DILLKPPDEKKFDTLKERLLKIYEXSXMRQFQKLLXEMELGDQKPSQLLRRMRDLARDKM 509
           D +LK  D K +DTLK++LL       +   +  L   +   ++  QL    + L R+  
Sbjct: 146 DEILKALDNK-YDTLKDKLLLDALRKQLGDSEWALLSEQERQRRLMQLKLEEKRLRREGK 204

Query: 510 PDETLRIMWQGH-LSAAVRGVLAVCEAKDLEHL 605
            DE  R++ +G  + A +R ++   +A+  E L
Sbjct: 205 MDELARLLGEGFAMDANLRKLMGDNKARYEEKL 237


>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2557

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
 Frame = +3

Query: 330  DILLKPPDEKKFDTLKERLLKIYEXSXMRQFQKLLXEMELGDQKPSQLLRRMRDLARDKM 509
            D +LK  D K +DTLK++LL       +   +  L   +   ++  QL    + L R+  
Sbjct: 872  DEILKALDNK-YDTLKDKLLLDALRKQLGDSEWALLSEQERQRRLMQLKLEEKRLRREGK 930

Query: 510  PDETLRIMWQGH-LSAAVRGVLAVCEAKDLEHL 605
             DE  R++ +G  + A +R ++   +A+  E L
Sbjct: 931  MDELARLLGEGFAMDANLRKLMGDNKARYEEKL 963


>SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)
          Length = 567

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 450 GDQKPSQLLRRMRDLARDKMPDETLRIMWQGHLSAAVRGVLAVCEAKDLEH 602
           GD++ S L  R+RD+  D+ PD    ++W     A  +G L+  ++    H
Sbjct: 99  GDEEGSGLEERLRDIDLDRDPD----VLWDALGKAEQQGFLSALKSGKFSH 145


>SB_15517| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
          Length = 799

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 258 KLSDEARYNLVVTKLGKDVVQQVSDILL-KPPDEKKFDTLKERLLKIYEXSXMRQFQKLL 434
           K   E+R  L++  L     Q + D++  K P E  +DTLK RL++ Y      + ++  
Sbjct: 35  KTRTESRVPLLLCGLTAGQYQTLRDLVAPKVPKEVAYDTLKGRLIEHYGSVRNTRLERAK 94

Query: 435 XEMELGDQKPS 467
                 D+K S
Sbjct: 95  FRALRRDEKES 105


>SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)
          Length = 836

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 646 RGCVVSMTLSAIADRCSKSFASQTASTP-RTAADR*PCHII 527
           +G V  + LS +AD  +KS+ S    TP R   +R P H++
Sbjct: 302 QGAVWPLLLSGVADLLNKSWHSTINDTPFRVYKNREPSHLV 342


>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
          Length = 1558

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +3

Query: 309  DVVQQVSDILLKPPDEKKFD--TLKERLLKIYEXSXMRQFQKLLXEMELGDQKPSQLLRR 482
            +VV ++ +I +K P E  F   ++ ERL K        + ++ L        K    +RR
Sbjct: 1381 NVVGELVNIKVKGPMEADFSVQSITERLAKKNAFLTRAKLKEYLASARAPGDKEEFTMRR 1440

Query: 483  MRDLARDKMPDE 518
            +R+L  DK  ++
Sbjct: 1441 LRELRGDKNTEQ 1452


>SB_17356| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 982

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 26  LNGYINIKXIYTTQW*PRNXNIDAARYQD 112
           L GY N    YT  W PRN  +   RYQ+
Sbjct: 874 LEGYTN----YTLAWAPRNTTLKPCRYQE 898


>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1933

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 465 SQLLRRMRDLARDKMPDETLRIMWQGHLSAAVRGVLAVCEAKDLEHLSAIADK 623
           S+  +R   L R K   + L+I +  HLSA V  + +VC+ K + +++   D+
Sbjct: 188 SEEFQRAEHLVRAKAVKDALQIGF--HLSATVNQLQSVCQTKGMFNVAVTFDR 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,330,592
Number of Sequences: 59808
Number of extensions: 319711
Number of successful extensions: 731
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)