Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_C21
(544 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 81 6e-16
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 9e-15
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 3e-14
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 55 4e-08
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 54 8e-08
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 49 2e-06
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 45 5e-05
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 44 8e-05
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 44 8e-05
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 44 1e-04
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 42 2e-04
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 41 6e-04
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 6e-04
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 40 0.001
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 39 0.003
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 37 0.009
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 37 0.012
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 36 0.021
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.021
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 35 0.037
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 35 0.049
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 34 0.065
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 34 0.086
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 31 0.46
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 31 0.61
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 31 0.80
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 30 1.4
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 30 1.4
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19) 29 1.9
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 29 2.5
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 29 3.2
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 29 3.2
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 28 4.3
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 28 4.3
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 28 5.7
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 27 9.9
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 81.0 bits (191), Expect = 6e-16
Identities = 33/72 (45%), Positives = 51/72 (70%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGT 337
T++YVG L +LER F+K+G+L+ VWVA NPPGFAF+E+E+ ++AE+A ++G
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGA 63
Query: 338 EMLGATLKVEIS 373
+ T++VE S
Sbjct: 64 NVCDRTIRVEFS 75
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 77.0 bits (181), Expect = 9e-15
Identities = 32/72 (44%), Positives = 49/72 (68%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGT 337
+RVY+G + + K ++EREF+ +G L VWVA NPPGFAF FE+ ++AEDA ++G
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGR 61
Query: 338 EMLGATLKVEIS 373
+ G +VE++
Sbjct: 62 YICGQRARVELA 73
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 75.4 bits (177), Expect = 3e-14
Identities = 32/72 (44%), Positives = 48/72 (66%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGT 337
T+VY+G L + K ++E EF YG L VWVA NPPGFAF F++ ++AEDA ++G
Sbjct: 32 TKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAVRELDGR 91
Query: 338 EMLGATLKVEIS 373
+ G ++VE++
Sbjct: 92 YICGQRVRVELA 103
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 54.8 bits (126), Expect = 4e-08
Identities = 29/71 (40%), Positives = 43/71 (60%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTE 340
RVY+G L G ++D+ R F YG+L + + N + F+EFE+ ++A+DA NG E
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNN---YGFVEFEDDRDADDAVYECNGKE 60
Query: 341 MLGATLKVEIS 373
MLG + VE S
Sbjct: 61 MLGERILVEHS 71
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 54.0 bits (124), Expect = 8e-08
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Frame = +2
Query: 146 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAED 313
+S RVYVG L + ++++DL F KYG + V + PP FAF+EFE+ ++AED
Sbjct: 257 NSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPP-FAFVEFEDPRDAED 315
Query: 314 ACXAMNGTEMLGATLKVE 367
A +G E G ++VE
Sbjct: 316 AVKGRDGHEFDGYRIRVE 333
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 49.2 bits (112), Expect = 2e-06
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTE 340
RVY+G L G +++D+++ F YG+ + L G+ F+EF+ +AEDA NG +
Sbjct: 4 RVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKD-GYGFVEFDYSDDAEDAVYECNGKK 62
Query: 341 MLG 349
MLG
Sbjct: 63 MLG 65
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 319
G ++V + E +++D+ F YG++ ++ V L+ G+A +E+E +EA+ A
Sbjct: 292 GWILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSAL 351
Query: 320 XAMNGTEMLGATLKVE 367
A+NG EMLG + V+
Sbjct: 352 EALNGAEMLGQNISVD 367
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/67 (34%), Positives = 39/67 (58%)
Frame = +2
Query: 149 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAM 328
S TRVY G L ++ DLE+ YG++ + + L G+ F+EF++ ++A+D +
Sbjct: 2 SRSTRVYFGRLPRDCRERDLEKFVRGYGRVREISMKL---GYGFVEFDDYRDADDCVYDL 58
Query: 329 NGTEMLG 349
NG +LG
Sbjct: 59 NGRNLLG 65
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 47.6 bits (108), Expect = 7e-06
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACXAM 328
VYVG L + DL + F++YGK+ V + + G AFI F + Q A++A A+
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAV 71
Query: 329 NGTEMLGATLKVEIS 373
N +M G T+K I+
Sbjct: 72 NKKQMFGRTIKCTIA 86
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/75 (36%), Positives = 43/75 (57%)
Frame = +2
Query: 143 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACX 322
M+S GT+++VG L + K DLE F YGKL + + FIE+E+ ++AE+A
Sbjct: 1 MASRGTQLFVGRLSKETKLRDLENVFYLYGKLLRCDL---KTAYGFIEYEDPRDAEEAMR 57
Query: 323 AMNGTEMLGATLKVE 367
N ++ G+ + VE
Sbjct: 58 RENNRKLFGSRIVVE 72
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +2
Query: 167 YVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACXAMN 331
YVGGL E + ++ L F +G + V + ++ GF F+EFE ++ A MN
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 332 GTEMLGATLKVEIS 373
+E+ G T++V ++
Sbjct: 68 ESELFGRTIRVNLA 81
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 44.0 bits (99), Expect = 8e-05
Identities = 20/65 (30%), Positives = 39/65 (60%)
Frame = +2
Query: 179 LVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEMLGATL 358
L +++ D+E+ YGK+ + + G+ F+EF++ ++AEDA +NG +++G +
Sbjct: 696 LPRDVRESDVEKFLRGYGKIRDISLKR---GYGFVEFDDHRDAEDAVHDLNGRDLIGERV 752
Query: 359 KVEIS 373
VE S
Sbjct: 753 VVEFS 757
Score = 30.7 bits (66), Expect = 0.80
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEM 343
V V L +DL+ F KYGK+ G +EFE+ + A ++ TE+
Sbjct: 800 VIVENLSSRTSWQDLKDYFRKYGKVTYADAHKKRIGEGVVEFESKDDLNTAIEKLDDTEL 859
Query: 344 LGATLKV 364
G ++V
Sbjct: 860 GGRRIRV 866
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 44.0 bits (99), Expect = 8e-05
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSV---WVALNPP--GFAFIEFENLQEAEDACXA 325
RVYVG + +++E + F +G +N + W LN GFAF+E++ + A+ A
Sbjct: 103 RVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQ 162
Query: 326 MNGTEMLGATLKV 364
MNG + G +KV
Sbjct: 163 MNGVLLGGRNIKV 175
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACXA 325
R+Y+ + + ++D++ F+ +GK+ ++ P G+ FIE+EN Q A DA +
Sbjct: 200 RIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIAS 259
Query: 326 MNGTEMLGATLKV 364
MN ++ G L+V
Sbjct: 260 MNLFDLGGQFLRV 272
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +2
Query: 152 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDA 316
G TR+YVG L I + ++ F+ +G ++SV + + G+ F++F + A+ A
Sbjct: 240 GPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRA 299
Query: 317 CXAMNGTEMLGATLKV 364
MNG E+ G LK+
Sbjct: 300 MEQMNGFELAGRPLKI 315
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGT 337
TR++VGGL I +LEREFD++G + + A+I +++L A A M G
Sbjct: 318 TRLWVGGLGPWISIPELEREFDRFGAIRRIDYR-KGGDHAYILYDSLDAASVAAREMRGF 376
Query: 338 EMLGATLKVEISTK 379
+M L+++ + K
Sbjct: 377 QMGDRRLRIDFADK 390
Score = 34.3 bits (75), Expect = 0.065
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACXAMN 331
++VG L GI +DL F+K+G + V + G +AF++F +L A A AM
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKCAMQ 298
Query: 332 G 334
G
Sbjct: 299 G 299
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACX 322
G +Y+ L + I E L EF YG ++S V N GF F+ F + +EA A
Sbjct: 211 GVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVT 270
Query: 323 AMNGTEMLGATLKVEISTK 379
MNG ++ L V ++ +
Sbjct: 271 EMNGRILISKPLYVALAQR 289
Score = 40.7 bits (91), Expect = 8e-04
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACXA 325
T VYV + + E ++ + GK+ S+ V +P G F F+ FE +EAE+A
Sbjct: 109 TNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNV 168
Query: 326 MNGTEMLGATL 358
+NG E+ G L
Sbjct: 169 LNGKEIGGRRL 179
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 41.1 bits (92), Expect = 6e-04
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 310
+++VGGL KE L+ F KYG+L V + ++ P GFAF++F++ EA+
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEAD 84
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 41.1 bits (92), Expect = 6e-04
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACXAMN 331
++V L K+ ++E F K+G + V + N P G+ ++E+E A A ++
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
Query: 332 GTEMLGATLKVEIS 373
TE+ G T+ V +S
Sbjct: 233 KTEVKGRTISVALS 246
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/72 (26%), Positives = 37/72 (51%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEM 343
++VGG+ + ++ +ER F +YG++ V V A + F+++ A A M G M
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKV-VINRVTNQALVSFDSVDSATIAHAQMKGRTM 388
Query: 344 LGATLKVEISTK 379
++VE ++
Sbjct: 389 FSRRVRVEFVSR 400
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACXAMN 331
++VG L E I++ED+ + F +YG++ SV + + +F++F +++ A A + N
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESVKILPKRSAEGGRASFVDFVDIRSATKAHESPN 67
Score = 30.7 bits (66), Expect = 0.80
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 152 GGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG--FAFIEFENLQEAEDACX 322
G TR ++VG + + DL+ F++YG++ V + P +AF++F L A A
Sbjct: 246 GCTRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQARR 305
Query: 323 AMN 331
M+
Sbjct: 306 KMD 308
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +2
Query: 152 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 316
G T + V L EDL++ F KYG L +++ + GFAF+ F ++AEDA
Sbjct: 14 GMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDA 73
Query: 317 CXAMNGT 337
M+ T
Sbjct: 74 MDCMDAT 80
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA----LNPPGFAFIEFENLQEAEDACXAM 328
+ Y+G L + + DL+ F +Y ++ ++ P GFAF+ F + + EDA +
Sbjct: 231 KCYIGNLDFKVNEADLQDRFSRYDVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINEL 290
Query: 329 NGTEMLGATLKV 364
+G E G ++KV
Sbjct: 291 DGQEFDGRSMKV 302
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACX 322
T++YV L + K+ ++ F YG++ +V + + GFA++E+ + +E E A
Sbjct: 1157 TKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALK 1216
Query: 323 AMNGTEMLGATLKVE 367
M+G ++ G + V+
Sbjct: 1217 HMDGGQIDGQEIAVQ 1231
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLERE-FDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACXA 325
++V L K L +E F + G + VA+NP GFAF+++ +EAE A
Sbjct: 207 LFVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRA 266
Query: 326 MNGTEMLGATLKV 364
NG ++ G+ ++V
Sbjct: 267 HNGRQVEGSNIRV 279
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 37.1 bits (82), Expect = 0.009
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 161 RVYVGGLV-EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGT 337
R+++G L + I ++DLE F ++GK+ + N F F++FE + A++A +G
Sbjct: 47 RIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHAN---FGFVQFETEKGADEAVAKEHGR 103
Query: 338 EMLGATLKVEI 370
+ G + V I
Sbjct: 104 IINGKKIDVRI 114
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 36.7 bits (81), Expect = 0.012
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTE 340
+VY G L ++DLE +GK+ V G+A++ F+ ++A+ A A+N +E
Sbjct: 4 KVYCGRLPATATEKDLENLVKVFGKVREVDFK---EGYAYVVFKENKDADRAVAALNNSE 60
Query: 341 MLGATLKVE 367
GA + +E
Sbjct: 61 FHGAKILME 69
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 35.9 bits (79), Expect = 0.021
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACXAMN 331
V++GGL E + + L F+K+G + V + + G F+ F + AE A MN
Sbjct: 526 VWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHFWSSDVAEAANVGMN 585
Query: 332 GTEMLGATLKVE 367
G ++LG ++ +
Sbjct: 586 GCDILGKIVETK 597
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 35.9 bits (79), Expect = 0.021
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 269 GFAFIEFENLQEAEDACXAMNGTEMLGATLKV 364
GF F+ F N ++A+ A ++NG E+ G TLK+
Sbjct: 100 GFGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 131
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 35.1 bits (77), Expect = 0.037
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +2
Query: 173 GGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNG 334
GGL+ G+ +E + R F YG L V V L ++F+ +++ A +A +NG
Sbjct: 55 GGLMCGVDRESITRVFSLYGTLERV-VMLPQRSYSFVSYKSHNNALNAMRNLNG 107
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 34.7 bits (76), Expect = 0.049
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACXAM 328
+Y+G + G + ++++ F+++G +N + ++ + G+AF+EF + A+ A M
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADTM 159
Query: 329 NGTEMLGATLK 361
+ M G LK
Sbjct: 160 HNYMMFGRLLK 170
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 34.7 bits (76), Expect = 0.049
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACX 322
T + + + + +ED+++ F G + S + + G+AF+ ++N +A A
Sbjct: 27 TNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVR 86
Query: 323 AMNGTEMLGATLKVEIS 373
MNG + TLKV +
Sbjct: 87 EMNGARLQNKTLKVSFA 103
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 34.3 bits (75), Expect = 0.065
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACXAM 328
V+VG + +E L+ F + G + S + + P G+ F E+++ + A A +
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNL 86
Query: 329 NGTEMLGATLKVE 367
NG E+ G L+V+
Sbjct: 87 NGYELNGRALRVD 99
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 33.9 bits (74), Expect = 0.086
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Frame = +2
Query: 140 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQE 304
T G+ +++ L + DL + F +G + S V ++ F F+ ++N+
Sbjct: 271 TPGPDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMS 330
Query: 305 AEDACXAMNGTEMLGATLKVEI 370
A++A MNG ++ LKV++
Sbjct: 331 AQNAIQHMNGFQIGAKRLKVQL 352
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 319
G +YV + + + + + + F+ YG + + + + P G F+ ++ EA+ A
Sbjct: 132 GANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAI 191
Query: 320 XAMNGTEMLGATLKVEI 370
+++GT G+T+ ++I
Sbjct: 192 SSLSGTFFPGSTMGLQI 208
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACX 322
T + V + + + + F+ LN+ + + P GF F+++ ++A+ A
Sbjct: 47 TTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAID 106
Query: 323 AMNGTEMLGATLKVEIS 373
+NG + LKV S
Sbjct: 107 KLNGFTIGNKVLKVAFS 123
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-----WVALNPPGFAFIEFENLQEAEDAC 319
G +YV + +E + F + G +N V W GF F+ +EA++A
Sbjct: 274 GCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAI 333
Query: 320 XAMNG 334
+NG
Sbjct: 334 QTLNG 338
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 33.1 bits (72), Expect = 0.15
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEM 343
VY+ L I +E L+ E+ +YG ++ V +AF+ F A A +G EM
Sbjct: 331 VYLRNLSPSITEEKLKEEYSQYGAVDRV---KKLKDYAFVHFTERDHALKAIEETDGKEM 387
Query: 344 LGATLKVEIS 373
G LK+E S
Sbjct: 388 DG--LKIEAS 395
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACX 322
++V++G + +++L F++ G + + ++P GFAF F N EA++A
Sbjct: 152 SQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVK 211
Query: 323 AMNGTEML-GATLKVEIS 373
++ E+ G L V IS
Sbjct: 212 KLDNKEIRPGKRLGVCIS 229
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Frame = +2
Query: 143 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVALNPP------GFAFIEFENLQ 301
+S +R++VG + + K+++ EF K L+ V V L+ GFAF+E+E+ Q
Sbjct: 228 ISVANSRLFVGSIPKTKSKQEILEEFSKVTNGLDDVIVYLSADQKGKNRGFAFLEYESHQ 287
Query: 302 EA 307
A
Sbjct: 288 AA 289
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 33.1 bits (72), Expect = 0.15
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +2
Query: 161 RVYVGGLVEGIKKED--------LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 316
+++VGGL E KED LE + DK + GFAF+E N +A++
Sbjct: 109 KIFVGGLPEDATKEDIQEAIESLLEEKVDKVDLIMKKEDETKHRGFAFVELNNEDQADEL 168
Query: 317 C 319
C
Sbjct: 169 C 169
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 33.1 bits (72), Expect = 0.15
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDAC-XAMNG 334
T +YVGGL + ++DL F ++G+L S+ + + AF+ F + AE A + N
Sbjct: 304 TTLYVGGLEGKVTEQDLRDHFYQFGELRSISM-VPRQNCAFVCFTSRAAAEAAADRSFNK 362
Query: 335 TEMLGATLKV 364
+ G LK+
Sbjct: 363 LILKGRRLKI 372
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 31.9 bits (69), Expect = 0.35
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWV--ALNPPGFAFIEFENLQEAEDACXA 325
+Y+ L E IKKE+L++ F ++G + + L G AF+ F+++ A +A +
Sbjct: 9 IYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRS 68
Query: 326 MNGTEMLGATLKVE 367
M G ++++
Sbjct: 69 MQGFPFYDKPMRIQ 82
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 31.5 bits (68), Expect = 0.46
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +2
Query: 152 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN--PPG---FAFIEFENLQEAEDA 316
GG ++V L + DL+ F +YGK+ + N PG F + +EA
Sbjct: 347 GGKSLWVANLSSITRAADLKTRFSQYGKVVGAKIVTNSKAPGAQCFGLVTMTTSEEAAKC 406
Query: 317 CXAMNGTEMLGATLKVE 367
++ TE+ G + V+
Sbjct: 407 IQHLHRTELHGRAITVD 423
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 31.5 bits (68), Expect = 0.46
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +2
Query: 179 LVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACXAMNGTEML 346
+V+ + E++E DK + +W+ +P G + + +E+ A A NG + +
Sbjct: 185 VVQVMAVEEVEEMIDKKLQKPKIWIYKHPDGSSKGECTVTYEDPPTASAAIEWFNGKDFM 244
Query: 347 GATLKVEIS 373
G ++KVE++
Sbjct: 245 GQSIKVELA 253
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 31.5 bits (68), Expect = 0.46
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +2
Query: 200 EDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACXAMNG 334
ED+ F++YG + VWV + G +++F A AC M+G
Sbjct: 37 EDIRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASSAALACEEMDG 86
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 31.1 bits (67), Expect = 0.61
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACX 322
T +Y+ GL +DL R KYG + S L+ G+ F++FE+ A+ A
Sbjct: 100 TNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVA 159
Query: 323 AM 328
A+
Sbjct: 160 AL 161
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA----LNPPGFAFIEFENLQEAEDACXA 325
T +Y+ L + + LE F KYGK+ S + N G F E+ ++ E
Sbjct: 179 TNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIKD 238
Query: 326 MN 331
N
Sbjct: 239 FN 240
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 30.7 bits (66), Expect = 0.80
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 269 GFAFIEFENLQEAEDACXAMNGTEMLGATLKVEISTK 379
GF F+ EN ++ ED +G E G LKV ++K
Sbjct: 84 GFGFVTLENQEDLEDVTRKFDGFEYEGRRLKVAEASK 120
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFI 283
T VYVG L +K +L++ F +YG + V + G+AFI
Sbjct: 615 TTVYVGNLPPDVKDYELQQMFSQYGSILETKVFAD-KGYAFI 655
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACXAMNG 334
+YVG L +E + F+K K+ + +P + F+EFE +A++A M+
Sbjct: 371 LYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGPYCFVEFETHADAQEAKFRMDQ 430
Query: 335 TEMLGATLKVEIST 376
++ LKV +T
Sbjct: 431 RTVMDKKLKVNWAT 444
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSV 247
V+VG L +KK+ L++ F KYG++ SV
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESV 50
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL------NPPGFAFIEFENLQEAEDA 316
G +++G L + ++ L F +G + + N GFAFI F + ++ A
Sbjct: 99 GANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAA 158
Query: 317 CXAMNGTEMLGATLKVEISTK 379
AMNG + + V + K
Sbjct: 159 IEAMNGQYLCNRPITVSYAFK 179
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 146 SSGGTRVYVGGLVEGIKKEDLEREFDKYG 232
S+ +V++GGL G +EDL+ F YG
Sbjct: 198 SANDGKVFIGGLAFGTTEEDLKEYFSTYG 226
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 272 FAFIEFENLQEAEDACXAMNGTEMLGATLKVEI 370
F F+ ++N+ A++A MNG ++ LKV++
Sbjct: 305 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQL 337
>SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)
Length = 486
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 271
VYVG + + K+D+ R F KYG + V V G
Sbjct: 372 VYVGKISDETHKDDVWRRFRKYGPIEKVTVHFRDNG 407
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACXAMN 331
+Y+ I+K LE F YG + + + GF ++ +EN AE A A+
Sbjct: 65 IYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSKGFGYVTYEN---AESAQRALA 121
Query: 332 GTEML 346
GT ++
Sbjct: 122 GTHII 126
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKL 238
+V++G L G+K D+ F KYG +
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTI 383
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 28.7 bits (61), Expect = 3.2
Identities = 8/27 (29%), Positives = 20/27 (74%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLN 241
++++GGL +ED+++ F ++GK++
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKVS 210
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---------NPP---GFAFIEFENLQE 304
+++VGGL +ED++ F+ + N + + NP GFAF+ F+N +
Sbjct: 140 KIFVGGLASTTVEEDIKEYFNSLCRKNGMGEVIDVDLKRDRDNPKRIRGFAFVTFDNDEI 199
Query: 305 AEDAC 319
E C
Sbjct: 200 VEKVC 204
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 263 PPGFAFIEFENLQEAEDACXAMNGT-EMLG 349
P GFAF+EF N +EA A A N E+ G
Sbjct: 623 PLGFAFVEFTNHKEALAALRATNNNPELFG 652
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 269 GFAFIEFENLQEAEDACXAMN 331
GFAFIEFE+ Q+AE N
Sbjct: 130 GFAFIEFESKQQAEHVVQMFN 150
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 344 TSQYHSSRYTHLPPPASS 291
T++YH ++T LPPP+ S
Sbjct: 169 TTEYHPEQHTPLPPPSKS 186
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 269 GFAFIEFENLQEAEDACXAMNGTEMLGATLKVEIS 373
GF F+ F EA A +NGT + G KVE+S
Sbjct: 125 GFGFVTFNTAAEANKAREKLNGTIVDGR--KVEVS 157
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/66 (19%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACXA 325
++++GGL + ++ ++ +G+L + + + G+AF E+ +L + A
Sbjct: 674 KIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQG 733
Query: 326 MNGTEM 343
+NG ++
Sbjct: 734 LNGMQL 739
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,810,148
Number of Sequences: 59808
Number of extensions: 223800
Number of successful extensions: 603
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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