Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_C21
(544 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 65 2e-11
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 64 6e-11
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 64 8e-11
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 64 8e-11
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 59 2e-09
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 59 2e-09
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 59 2e-09
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 58 3e-09
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 58 3e-09
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 58 5e-09
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 54 8e-08
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 52 2e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 52 2e-07
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 49 2e-06
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 49 2e-06
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 49 2e-06
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 48 3e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 48 4e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 48 5e-06
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 46 2e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 2e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 45 3e-05
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 45 4e-05
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 45 4e-05
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 45 4e-05
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 45 4e-05
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 44 9e-05
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 44 9e-05
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 44 9e-05
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 44 9e-05
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 44 9e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 43 1e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 43 1e-04
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 43 2e-04
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 43 2e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 42 2e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 42 2e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 42 2e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 42 2e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 42 3e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 42 4e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 42 4e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 42 4e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 42 4e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 41 5e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 41 5e-04
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 41 6e-04
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 41 6e-04
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 41 6e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 41 6e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 41 6e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 40 8e-04
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 40 8e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 40 8e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 40 8e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 40 8e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 40 0.001
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 40 0.001
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 40 0.001
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 40 0.001
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 40 0.001
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 40 0.001
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 40 0.001
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 40 0.001
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 40 0.001
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 40 0.001
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 38 0.003
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 38 0.003
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 38 0.003
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 38 0.003
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 38 0.004
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 38 0.006
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 38 0.006
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 38 0.006
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 37 0.008
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 37 0.008
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 37 0.008
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 37 0.008
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 37 0.010
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 37 0.010
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 37 0.010
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 37 0.010
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 37 0.010
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 37 0.010
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 37 0.010
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 36 0.013
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 36 0.013
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 36 0.013
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 36 0.013
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 36 0.013
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 36 0.013
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 36 0.017
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 36 0.017
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 36 0.017
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 36 0.017
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 36 0.023
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 36 0.023
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 36 0.023
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 35 0.031
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 35 0.031
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 35 0.031
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 35 0.031
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 35 0.031
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 35 0.031
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 35 0.031
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 35 0.031
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 34 0.053
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 34 0.053
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 34 0.053
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 34 0.071
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 34 0.071
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 33 0.093
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 33 0.093
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 33 0.093
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 33 0.12
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 33 0.12
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 33 0.16
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 33 0.16
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 33 0.16
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 33 0.16
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 32 0.22
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 32 0.22
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 32 0.22
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 32 0.22
At2g47310.1 68415.m05906 flowering time control protein-related ... 32 0.22
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 32 0.22
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 32 0.28
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.28
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 32 0.28
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 32 0.28
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 32 0.28
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 31 0.38
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 31 0.38
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 31 0.38
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 31 0.38
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 31 0.38
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 31 0.38
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 31 0.50
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 31 0.50
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 31 0.50
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 31 0.66
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 31 0.66
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 0.66
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 31 0.66
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 31 0.66
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 30 0.87
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 30 0.87
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 30 0.87
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 30 0.87
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 30 0.87
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c... 30 1.1
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 30 1.1
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 30 1.1
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 29 1.5
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 29 1.5
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 2.0
At5g03480.1 68418.m00304 expressed protein ; expression support... 29 2.0
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 29 2.0
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 29 2.0
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 29 2.7
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 29 2.7
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 29 2.7
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 28 3.5
At1g79880.3 68414.m09332 La domain-containing protein contains P... 28 3.5
At1g79880.2 68414.m09331 La domain-containing protein contains P... 28 3.5
At1g79880.1 68414.m09333 La domain-containing protein contains P... 28 3.5
At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,... 28 3.5
At1g05510.1 68414.m00563 expressed protein 28 3.5
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 28 4.6
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 28 4.6
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 28 4.6
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 28 4.6
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 28 4.6
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 28 4.6
At3g08670.1 68416.m01007 expressed protein 27 6.1
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 27 6.1
At2g33440.1 68415.m04099 splicing factor family protein similar ... 27 6.1
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 27 6.1
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l... 27 6.1
At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM dom... 27 8.1
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 27 8.1
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 27 8.1
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/59 (47%), Positives = 42/59 (71%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNG 334
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA A++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 64.1 bits (149), Expect = 6e-11
Identities = 27/59 (45%), Positives = 41/59 (69%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNG 334
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA ++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 63.7 bits (148), Expect = 8e-11
Identities = 28/58 (48%), Positives = 41/58 (70%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMN 331
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA A++
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 63.7 bits (148), Expect = 8e-11
Identities = 28/58 (48%), Positives = 41/58 (70%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMN 331
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA A++
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 58.8 bits (136), Expect = 2e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +2
Query: 143 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 313
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 314 ACXAMNGTEMLGATLKVEIS 373
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 58.8 bits (136), Expect = 2e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +2
Query: 143 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 313
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 314 ACXAMNGTEMLGATLKVEIS 373
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 58.8 bits (136), Expect = 2e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +2
Query: 143 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 313
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 314 ACXAMNGTEMLGATLKVEIS 373
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 58.4 bits (135), Expect = 3e-09
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +2
Query: 143 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 313
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 314 ACXAMNGTEMLGATLKVEIS 373
A +G + G L+VE++
Sbjct: 61 AIYGRDGYDFDGHHLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 58.4 bits (135), Expect = 3e-09
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +2
Query: 143 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 313
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 314 ACXAMNGTEMLGATLKVEIS 373
A +G + G L+VE++
Sbjct: 61 AIYGRDGYDFDGHHLRVELA 80
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 57.6 bits (133), Expect = 5e-09
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Frame = +2
Query: 143 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 313
MSS R +YVG L I+K ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 314 ACXAMNGTEMLGATLKVEIS 373
A +G + G L+VEI+
Sbjct: 61 AIYGRDGYDFDGCRLRVEIA 80
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 53.6 bits (123), Expect = 8e-08
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACXAMNGT 337
+YVG L I++ ++E F KYG++ + + + PP + F+EFE+ ++AEDA +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 338 EMLGATLKVEIS 373
+ G L+VE++
Sbjct: 69 NLDGCRLRVELA 80
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 52.4 bits (120), Expect = 2e-07
Identities = 27/74 (36%), Positives = 45/74 (60%)
Frame = +2
Query: 152 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMN 331
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA ++
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDADDARYYLD 65
Query: 332 GTEMLGATLKVEIS 373
G + G+ + VE S
Sbjct: 66 GRDFDGSRITVEAS 79
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 52.0 bits (119), Expect = 2e-07
Identities = 27/74 (36%), Positives = 45/74 (60%)
Frame = +2
Query: 152 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMN 331
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA ++
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDADDARHYLD 65
Query: 332 GTEMLGATLKVEIS 373
G + G+ + VE S
Sbjct: 66 GRDFDGSRITVEFS 79
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACX 322
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 323 AMNGTEMLGATLKV 364
M+G E+ + V
Sbjct: 72 HMHGRELGNKVISV 85
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACX 322
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 323 AMNGTEMLGATLKV 364
M+G E+ + V
Sbjct: 72 HMHGRELGNKVISV 85
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 48.8 bits (111), Expect = 2e-06
Identities = 23/69 (33%), Positives = 43/69 (62%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGT 337
T ++VGGL + EDL++ F+++G++ SV + + G F++F N AE+A +NGT
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEALEKLNGT 362
Query: 338 EMLGATLKV 364
+ T+++
Sbjct: 363 VIGKQTVRL 371
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/69 (33%), Positives = 42/69 (60%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGT 337
T ++VGGL + EDL++ F ++G++ SV + + G F++F N AE+A +NGT
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEALEKLNGT 364
Query: 338 EMLGATLKV 364
+ T+++
Sbjct: 365 VIGKQTVRL 373
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +2
Query: 149 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAM 328
S + ++VGGL + +EDL + F +G++ SV + + G F++F N Q AE+A +
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG-KGCGFVQFANRQSAEEAIGNL 382
Query: 329 NGT 337
NGT
Sbjct: 383 NGT 385
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 47.6 bits (108), Expect = 5e-06
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = +2
Query: 197 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEMLGATLKVEIST 376
KED++ E K+GKLN ++V N GF ++ FEN Q A A A++G G + T
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMT 547
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +2
Query: 146 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAED 313
S G R+YVG L + ++DL + F+ +G + V V + GF F++F L++A +
Sbjct: 281 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARN 340
Query: 314 ACXAMNGTEMLGATLKVEIST 376
A E+ G +KV T
Sbjct: 341 ALNLNGQLEIAGRAIKVSAVT 361
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/68 (36%), Positives = 41/68 (60%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEM 343
++VGG+ + K+DLE EF K+GK+ + L AFI++ + +A A +MNG M
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIED-FRFLRERKTAFIDYYEMDDALQA-KSMNGKPM 309
Query: 344 LGATLKVE 367
G+ L+V+
Sbjct: 310 GGSFLRVD 317
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEM 343
++VG L + DL F +YG ++ + V + GFAFI + +++EA A A+ G +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEAVAAKEALQGANL 78
Query: 344 LG 349
G
Sbjct: 79 NG 80
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACXA 325
T VYV L E +DL+ F +YGK+ S V + GF F+ FEN +A A +
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88
Query: 326 MNG 334
+NG
Sbjct: 89 LNG 91
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +2
Query: 149 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAM 328
S ++VGG+ + EDL + F ++G++ SV + + G F++F + + AEDA ++
Sbjct: 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG-KGCGFVQFADRKSAEDAIESL 376
Query: 329 NGT 337
NGT
Sbjct: 377 NGT 379
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +2
Query: 185 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEMLGATLKV 364
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISV 162
Query: 365 EISTK 379
E + K
Sbjct: 163 EYAVK 167
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTE- 340
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 341 -MLGATLKVE 367
G L+VE
Sbjct: 61 GRTGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +2
Query: 185 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEMLGATLKV 364
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISV 162
Query: 365 EISTK 379
E + K
Sbjct: 163 EYAVK 167
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTE- 340
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 341 -MLGATLKVE 367
G L+VE
Sbjct: 61 GRTGRRLRVE 70
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 319
G + V G+ E ++ED+ F +G++ ++ + L+ G+A IE+E +EA+ A
Sbjct: 94 GWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAI 153
Query: 320 XAMNGTEMLGATLKVE 367
AMNG E+L + V+
Sbjct: 154 SAMNGAELLTQNVSVD 169
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 44.8 bits (101), Expect = 4e-05
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +2
Query: 149 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDA 316
S G +Y+ L + + E L+ F +YG + S V LNP GF F+ + N +EA A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
Query: 317 CXAMNGTEMLG 349
MNG +M+G
Sbjct: 389 LSEMNG-KMIG 398
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACXA 325
T VYV L + I +++L + F K+G ++S V + G F F+ FE + A A
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 326 MNGTEM 343
MNG +
Sbjct: 289 MNGISL 294
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +2
Query: 140 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEA 307
T SG +++ L I + L F +G + S VA++ G+ F++FE + A
Sbjct: 130 TRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESA 189
Query: 308 EDACXAMNGTEM 343
+ A +NG M
Sbjct: 190 QAAIDKLNGMLM 201
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 269 GFAFIEFENLQEAEDACXAMNGTEMLGATLKVEISTK 379
G+A+I F N +A A A+N T + +++ +S +
Sbjct: 90 GYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNR 126
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 43.6 bits (98), Expect = 9e-05
Identities = 21/65 (32%), Positives = 38/65 (58%)
Frame = +2
Query: 185 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEMLGATLKV 364
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 66 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISV 122
Query: 365 EISTK 379
E + K
Sbjct: 123 EYAVK 127
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 43.6 bits (98), Expect = 9e-05
Identities = 21/65 (32%), Positives = 38/65 (58%)
Frame = +2
Query: 185 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEMLGATLKV 364
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 107 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISV 163
Query: 365 EISTK 379
E + K
Sbjct: 164 EYAVK 168
Score = 41.5 bits (93), Expect = 4e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEM 343
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEF 60
Query: 344 --LGATLKVE 367
G L+VE
Sbjct: 61 GRKGRRLRVE 70
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 43.6 bits (98), Expect = 9e-05
Identities = 25/73 (34%), Positives = 38/73 (52%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNG 334
GT V V L + DLE F YG++ + N F+EF +++ A+ A A+N
Sbjct: 222 GTLV-VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNR 280
Query: 335 TEMLGATLKVEIS 373
TE+ G +K+E S
Sbjct: 281 TEIAGKRIKLEHS 293
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 43.6 bits (98), Expect = 9e-05
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 316
V+VG ++ DLER FDKYG+++ V + G+AF+ FE+ ++AEDA
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDM---KSGYAFVYFEDERDAEDA 51
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/62 (32%), Positives = 37/62 (59%)
Frame = +2
Query: 194 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEMLGATLKVEIS 373
K+ D+E+ F+ YGK+ +V + N F+F++FE ++A A A +++L + VE +
Sbjct: 106 KEHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEATQRSKILDRVVSVEYA 162
Query: 374 TK 379
K
Sbjct: 163 LK 164
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 43.6 bits (98), Expect = 9e-05
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACXA 325
R ++GGL L F+KYG L V L+ GF FI F+ + ++A A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 326 MNGTEMLGATLKVE 367
MNG ++ G T+ V+
Sbjct: 68 MNGMDLDGRTITVD 81
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Frame = +2
Query: 140 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEA 307
TM G + VYVGGL I +E + R F YG + +V + ++ + F+ F N + A
Sbjct: 2 TMDDGNS-VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
Query: 308 EDACXAMNGTEMLGATLKV-EISTK 379
+DA M+G + G ++V +++T+
Sbjct: 61 DDAIEDMDGKSIGGRAVRVNDVTTR 85
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACXA 325
+VYVG L + + KE LE F + GK+ S V+ P GF F+ F + ++ E A A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 326 MNGTEMLGATLKV 364
+N + + G ++V
Sbjct: 238 LNNSLLEGQKIRV 250
Score = 35.5 bits (78), Expect = 0.023
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +2
Query: 146 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAE 310
S RVY+G + + E L + +++G + V V + F F +++++A
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 311 DACXAMNGTEMLGATLKVEISTK 379
+NG + G +KV I+ K
Sbjct: 132 AVVEKLNGNTVEGREIKVNITEK 154
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 319
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 130
Query: 320 XAMNGTEMLG 349
+N + + G
Sbjct: 131 KYLNQSVLEG 140
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 319
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 129
Query: 320 XAMNGTEMLG 349
+N + + G
Sbjct: 130 KYLNQSVLEG 139
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +2
Query: 146 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 310
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 245 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 311 DACXAMNGTEMLGATLKV 364
A ++NG ++ G ++V
Sbjct: 305 KAINSLNGADLDGRQIRV 322
Score = 30.3 bits (65), Expect = 0.87
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACXA 325
+++VG L + L + F+ G + V V + GF F+ E E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 326 MNGTEMLGATLKV 364
NG E G L+V
Sbjct: 160 FNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +2
Query: 146 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 310
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 311 DACXAMNGTEMLGATLKV 364
A ++NG ++ G ++V
Sbjct: 313 KAINSLNGADLDGRQIRV 330
Score = 30.3 bits (65), Expect = 0.87
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACXA 325
+++VG L + L + F+ G + V V + GF F+ E E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 326 MNGTEMLGATLKV 364
NG E G L+V
Sbjct: 160 FNGYEFEGRPLRV 172
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +2
Query: 146 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 310
+ G RVYVG L G+ LE F + GK+ V + GF F+ +++ QE +
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 311 DACXAMNGTEMLGATLKV 364
+A +++G ++ G ++V
Sbjct: 260 NAIKSLDGADLDGRQIRV 277
Score = 33.1 bits (72), Expect = 0.12
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +2
Query: 149 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAED 313
S +++VG L + L + F+ G + V V + GF F+ ++ E E
Sbjct: 88 SADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEA 147
Query: 314 ACXAMNGTEMLGATLKV 364
A NG E+ G L+V
Sbjct: 148 AAQQFNGYELDGRPLRV 164
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Frame = +2
Query: 146 SSGG-TRVYVGGLVEGIKKEDLEREFDKYGKL---NSVW--VALNPPGFAFIEFENLQEA 307
SSG T++YV GL ++ L F+++G L N V VA P GFAF+ +E +EA
Sbjct: 72 SSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA 131
Query: 308 EDACXAMNGTEMLGATLKVE 367
A M+G + G + VE
Sbjct: 132 MKAIQGMHGKFLDGRVIFVE 151
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACXA 325
T VYV L E ++L+ F +YG ++S V + G F F+ FEN ++A A A
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEA 284
Query: 326 MNG 334
+NG
Sbjct: 285 LNG 287
Score = 33.1 bits (72), Expect = 0.12
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACX 322
G +YV L + + E L F ++G + S V +P G + F+ F EA
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLN 386
Query: 323 AMNGTEMLGATLKVEISTK 379
MNG + G L V ++ +
Sbjct: 387 EMNGKMVGGKPLYVALAQR 405
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 41.5 bits (93), Expect = 4e-04
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACXA 325
++YVG L + + L + F+ +G + V + L+P GF FI+F L+ ++ A A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 326 MNG-TEMLGATLKV 364
+NG E+ G T+KV
Sbjct: 326 LNGKLEIAGRTIKV 339
Score = 37.1 bits (82), Expect = 0.008
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +2
Query: 197 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMN 331
++D+ E KYG +N ++V N GF ++ F++++ A A AM+
Sbjct: 458 RDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMH 502
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 41.5 bits (93), Expect = 4e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +2
Query: 143 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 307
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 308 EDACXAMNGTEMLGATLKV 364
DA MNG E+ G + V
Sbjct: 61 RDAIEEMNGKELDGRVITV 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 41.5 bits (93), Expect = 4e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +2
Query: 143 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 307
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 308 EDACXAMNGTEMLGATLKV 364
DA MNG E+ G + V
Sbjct: 61 RDAIEEMNGKELDGRVITV 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 41.5 bits (93), Expect = 4e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +2
Query: 143 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 307
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 308 EDACXAMNGTEMLGATLKV 364
DA MNG E+ G + V
Sbjct: 61 RDAIEEMNGKELDGRVITV 79
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 41.1 bits (92), Expect = 5e-04
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACX 322
+++++GG+ + ++ L F KYG++ V L+ GF F+ F + + A A
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 323 AMNGTEMLGATLKV 364
A++G ++ G +KV
Sbjct: 100 ALDGRDLHGRVVKV 113
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.1 bits (92), Expect = 5e-04
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +2
Query: 143 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEA 307
+ + T +Y+G + G + ++E F ++G + V VA N F FI+FE+ + A
Sbjct: 55 LQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVA 114
Query: 308 EDACXAMNGTEMLGATLKVEI 370
E A AMN ++ LKV +
Sbjct: 115 EIAAGAMNDYLLMEHMLKVHV 135
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/73 (31%), Positives = 39/73 (53%)
Frame = +2
Query: 146 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXA 325
SS G ++V L I E+L F YG++ V ++ +IEF ++++A+ A
Sbjct: 292 SSEGA-LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQG 350
Query: 326 MNGTEMLGATLKV 364
+NG E+ G LK+
Sbjct: 351 LNGLEVAGRQLKL 363
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 40.7 bits (91), Expect = 6e-04
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Frame = +2
Query: 146 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAE 310
+S +++++GGL + ++ L+ F +G++ V +A + GF F++F +A
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 311 DACXAMNGTEMLGATLKVEIS 373
A AM+G +LG L++ +
Sbjct: 97 SAKDAMDGKGLLGRPLRISFA 117
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGT 337
VYVG + DLER F K+G++ V + G+AF+ FE+ ++AEDA + T
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM---KSGYAFVYFEDERDAEDAIRRTDNT 58
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/62 (29%), Positives = 37/62 (59%)
Frame = +2
Query: 194 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEMLGATLKVEIS 373
++ D+ER F+ YGK+ +V + N FAF++F ++A A + + +++L + VE +
Sbjct: 108 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVEYA 164
Query: 374 TK 379
+
Sbjct: 165 LR 166
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 319
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 103
Query: 320 XAMNGTEMLGATLKVE 367
+++ + + G + VE
Sbjct: 104 RSLDHSVLQGRVITVE 119
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 319
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 133
Query: 320 XAMNGTEMLGATLKVE 367
+++ + + G + VE
Sbjct: 134 RSLDHSVLQGRVITVE 149
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 40.3 bits (90), Expect = 8e-04
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACX 322
T + V L ++EDL R F+++G + +++ + P GF FI+F + +A +A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 323 AMNGTEMLGATLKV 364
M+G +LG L V
Sbjct: 97 QMDGYLLLGRELTV 110
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 40.3 bits (90), Expect = 8e-04
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACX 322
G+ +Y+ L + + E L+ F +YG + S V +N G F F+ + N +EA A
Sbjct: 327 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMK 386
Query: 323 AMNGTEMLG 349
MNG +M+G
Sbjct: 387 EMNG-KMIG 394
Score = 37.5 bits (83), Expect = 0.006
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACXA 325
T VYV L + I ++L++ F KYG ++S V + G F F+ F + + A A
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 284
Query: 326 MNGTEM 343
MNG +
Sbjct: 285 MNGISL 290
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 140 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEA 307
T SG V++ L I + L F +G + S VA++ G+ F++FE + A
Sbjct: 126 TRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETA 185
Query: 308 EDACXAMNG 334
+ A +NG
Sbjct: 186 QAAIDKLNG 194
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 40.3 bits (90), Expect = 8e-04
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACX 322
T + V L ++EDL + F+++G + +++ + P GF F++F + +A DA
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 323 AMNGTEMLGATLKV 364
M+G +LG L V
Sbjct: 96 HMDGYLLLGRELTV 109
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 40.3 bits (90), Expect = 8e-04
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACXA 325
T VYV L E + E+L + F ++G S + + GF F+ FEN +A A A
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 326 MNG 334
+NG
Sbjct: 284 LNG 286
Score = 37.1 bits (82), Expect = 0.008
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +2
Query: 149 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDA 316
S G+ +YV L E + + L F +G + S V +P G + F+ F +EA A
Sbjct: 324 SQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRA 383
Query: 317 CXAMNGTEMLGATLKVEISTK 379
MNG ++ L V ++ +
Sbjct: 384 ITEMNGKMIVTKPLYVALAQR 404
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 40.3 bits (90), Expect = 8e-04
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACXA 325
T VYV LVE DL+R F ++G++ S V + G F F+ FE + A A
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 326 MNG 334
MNG
Sbjct: 179 MNG 181
Score = 36.7 bits (81), Expect = 0.010
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACX 322
G +YV L + + LE F ++G + S V ++ G + F+EF +EA A
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAML 281
Query: 323 AMNGTEMLG 349
MNG +M+G
Sbjct: 282 KMNG-KMVG 289
Score = 31.1 bits (67), Expect = 0.50
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +2
Query: 149 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDA 316
SG V+V L E I + L F +GK+ S VA + G + F++F + A
Sbjct: 28 SGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTA 87
Query: 317 CXAMNGT 337
C NGT
Sbjct: 88 CNFHNGT 94
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACXA 325
R+YVG L + LER F ++GK+ V + GF F++ N E A A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 326 MNGTEMLGATLKVEIS 373
++G + G +KV ++
Sbjct: 268 LDGQNLEGRAIKVNVA 283
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACXA 325
+++VG L + + L F++ G + V N GF F+ ++EAE A
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 326 MNGTEMLGATLKV 364
N E+ G L V
Sbjct: 174 FNSFEVNGRRLTV 186
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACXAM 328
++V + G K+ L R F+K+G++ ++ +P G A+IEF + AE+A ++
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENA-LSL 576
Query: 329 NGTEMLGATLKV 364
+GT + LK+
Sbjct: 577 DGTSFMSRILKI 588
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGT 337
T V+VGGL + + L+ F +YG++ V + F++F AE+A +NG
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEALRMLNGV 319
Query: 338 EMLGATLKV 364
++ G T+++
Sbjct: 320 QLGGTTVRL 328
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 39.5 bits (88), Expect = 0.001
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +2
Query: 146 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPGFAFIEF--ENLQEAEDA 316
S GG R++VGGL E + ++DL + F G +++V +V FA+I+F +
Sbjct: 6 SGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKL 65
Query: 317 CXAMNGTEMLGATLKVE 367
NG G L++E
Sbjct: 66 FSTYNGCVWKGGRLRLE 82
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACXAMN 331
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A +N
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEA-LQLN 149
Query: 332 GTEMLGATLKV 364
+E+ G LKV
Sbjct: 150 ESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACXAMN 331
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A +N
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEA-LQLN 149
Query: 332 GTEMLGATLKV 364
+E+ G LKV
Sbjct: 150 ESELHGRQLKV 160
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDAC 319
G+R++VGGL + DLER F ++G + + L GF FI F + + +++
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 320 XAMNGTE 340
M+G +
Sbjct: 66 REMHGRD 72
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/69 (26%), Positives = 40/69 (57%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGT 337
T ++VG + + + ++DL+ F ++G+L V + F+++ N AE A +NGT
Sbjct: 278 TTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAG-KRCGFVQYANRACAEQALSVLNGT 336
Query: 338 EMLGATLKV 364
++ G ++++
Sbjct: 337 QLGGQSIRL 345
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 39.5 bits (88), Expect = 0.001
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACXAM 328
VYVGG+ + + DL F +YG++ V + + GFAF+ +E+ + A +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 329 NGTEMLGATLKVE 367
NG +LG T+KV+
Sbjct: 98 NGALVLGRTIKVD 110
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACX 322
++++VGGL G L++ F +G++ V + GF F+ F A +A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 323 AMNGTEMLGATLKVEISTK 379
M+G E+ G ++V ++T+
Sbjct: 95 EMDGKELNGRQIRVNLATE 113
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACX 322
++++VGGL G L++ F +G++ V + GF F+ F A +A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 323 AMNGTEMLGATLKVEISTK 379
M+G E+ G ++V ++T+
Sbjct: 95 EMDGKELNGRQIRVNLATE 113
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/62 (29%), Positives = 37/62 (59%)
Frame = +2
Query: 194 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEMLGATLKVEIS 373
++ D+ER F+ YGK+ +V + N FAF++F ++A A + + +++L + VE +
Sbjct: 82 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVEYA 138
Query: 374 TK 379
+
Sbjct: 139 LR 140
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +2
Query: 191 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEMLGATLKVEI 370
+ ++L + F YG++ + N FIE+ ++++AE A A+N +E+ G +K+E+
Sbjct: 281 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 340
Query: 371 S 373
S
Sbjct: 341 S 341
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +2
Query: 191 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEMLGATLKVEI 370
+ ++L + F YG++ + N FIE+ ++++AE A A+N +E+ G +K+E+
Sbjct: 294 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 353
Query: 371 S 373
S
Sbjct: 354 S 354
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACXA 325
T +Y+ L + ++ L +F ++GK+ S+ +A + G+AF+ F+N ++A A
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 326 MNGTE 340
+NGT+
Sbjct: 261 VNGTK 265
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACXA 325
RVYVG L + LE+ F ++GK+ V + GF F+ ++ E +A A
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 326 MNGTEMLGATLKVEIS 373
++G + G ++V ++
Sbjct: 305 LDGQNLEGRAIRVNVA 320
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACXA 325
+++VG L + + L F++ G + V N GF F+ ++ EAE A
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 326 MNGTEMLGATLKV 364
N ++ G L V
Sbjct: 211 FNRYDLNGRLLTV 223
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 37.5 bits (83), Expect = 0.006
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACX 322
TRVYVG L + L F YG + V + GF F+ + + EAE A
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 323 AMNGTEMLGATLKVEI 370
M+G E+ G + V++
Sbjct: 63 GMDGKELNGRRVSVKL 78
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = +2
Query: 194 KKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACXAMNGTEMLGATL 358
+ E+L F+++G + V++ + P GFAF+EF + +A +A +MN G +
Sbjct: 59 RPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREI 118
Query: 359 KVEISTK 379
V ++++
Sbjct: 119 TVVVASE 125
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 37.5 bits (83), Expect = 0.006
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACX 322
++++VGGL E L+ F +GK+ V L+ GF F+ +++++ A +A
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 323 AMNGTEMLGATLKV 364
AM E+ G + V
Sbjct: 96 AMQNKELDGRIIGV 109
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 37.1 bits (82), Expect = 0.008
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACXAMN 331
+YVG + E++++ F G +N V + + P GFA++EF ++ +++ +N
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNS-LILN 163
Query: 332 GTEMLGATLKV 364
+E+ G +KV
Sbjct: 164 ESELHGRQIKV 174
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 37.1 bits (82), Expect = 0.008
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +2
Query: 143 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 307
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 308 EDACXAMNGT 337
DA MNG+
Sbjct: 61 RDAIEEMNGS 70
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACX 322
++++VGG+ + L F KYG++ + ++ GFAF+ F + +EA +A
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA-M 92
Query: 323 AMNGTEMLGATLKVEISTK 379
++G ++ G ++V +T+
Sbjct: 93 QLDGQDLHGRRIRVNYATE 111
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 319
T+V+VGGL + E L R FD+YG + V + G+ F+ F + + A AC
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 36.7 bits (81), Expect = 0.010
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACX 322
+++++GGL ++ L F K G++ + ++ GF F+ F + EA+ A
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 323 AMNGTEMLGATLKVE 367
NG ++ G T+ V+
Sbjct: 94 EFNGQQLNGRTIFVD 108
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 36.7 bits (81), Expect = 0.010
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +2
Query: 152 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 316
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 317 CXAMNGTEMLGATLKV 364
C A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 36.7 bits (81), Expect = 0.010
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +2
Query: 152 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 316
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 317 CXAMNGTEMLGATLKV 364
C A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 36.7 bits (81), Expect = 0.010
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +2
Query: 152 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 316
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 317 CXAMNGTEMLGATLKV 364
C A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 36.7 bits (81), Expect = 0.010
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDAC 319
G+ V++GGL + +EDL ++ G++ V + + + G+AF+ F+ A+ A
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 320 XAMNGTEMLGATLKVEIS 373
++ E G T++ +S
Sbjct: 175 EELHSKEFKGKTIRCSLS 192
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 36.7 bits (81), Expect = 0.010
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNG 334
GT V V L I +DL F +G++ + + F+EF +++ AE A A+N
Sbjct: 253 GTLV-VFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 335 TEMLGATLKVEIS 373
E+ G +KVE S
Sbjct: 312 CEIAGKRIKVEPS 324
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/70 (17%), Positives = 32/70 (45%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEM 343
++V + ++ +L F++YG + +++ GF I + +++ A A ++ +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 344 LGATLKVEIS 373
L + S
Sbjct: 230 RRRKLDIHFS 239
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 36.7 bits (81), Expect = 0.010
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNG 334
GT V V L I +DL F +G++ + + F+EF +++ AE A A+N
Sbjct: 253 GTLV-VFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 335 TEMLGATLKVEIS 373
E+ G +KVE S
Sbjct: 312 CEIAGKRIKVEPS 324
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/70 (17%), Positives = 32/70 (45%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEM 343
++V + ++ +L F++YG + +++ GF I + +++ A A ++ +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 344 LGATLKVEIS 373
L + S
Sbjct: 230 RRRKLDIHFS 239
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 36.3 bits (80), Expect = 0.013
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACXA 325
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 326 MNGTEMLGATLKVE 367
E+ G ++V+
Sbjct: 170 KTFHELNGKLVEVK 183
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 36.3 bits (80), Expect = 0.013
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACXA 325
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 326 MNGTEMLGATLKVE 367
E+ G ++V+
Sbjct: 170 KTFHELNGKLVEVK 183
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 36.3 bits (80), Expect = 0.013
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACXA 325
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 326 MNGTEMLGATLKVE 367
E+ G ++V+
Sbjct: 170 KTFHELNGKLVEVK 183
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 36.3 bits (80), Expect = 0.013
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACX 322
T++YVGGL +KE L F ++G++ V V + G+ F+ F++ + A AC
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
Query: 323 AMNGT 337
N T
Sbjct: 73 DPNPT 77
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 36.3 bits (80), Expect = 0.013
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Frame = +2
Query: 140 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQE 304
T G +++ + + ++L F +GK+ S V ++ F FI +++
Sbjct: 333 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 392
Query: 305 AEDACXAMNGTEMLGATLKVEI 370
A++A MNG ++ G LKV++
Sbjct: 393 AQNAINTMNGCQLSGKKLKVQL 414
Score = 30.7 bits (66), Expect = 0.66
Identities = 14/66 (21%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACXAM 328
+++VG L + + + +++ F +YG + + + G F+++E+ ++A A A+
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 329 NGTEML 346
NG ++
Sbjct: 170 NGRHIM 175
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 36.3 bits (80), Expect = 0.013
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Frame = +2
Query: 140 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQE 304
T G +++ + + ++L F +GK+ S V ++ F FI +++
Sbjct: 324 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 383
Query: 305 AEDACXAMNGTEMLGATLKVEI 370
A++A MNG ++ G LKV++
Sbjct: 384 AQNAINTMNGCQLSGKKLKVQL 405
Score = 30.7 bits (66), Expect = 0.66
Identities = 14/66 (21%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACXAM 328
+++VG L + + + +++ F +YG + + + G F+++E+ ++A A A+
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 329 NGTEML 346
NG ++
Sbjct: 161 NGRHIM 166
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 35.9 bits (79), Expect = 0.017
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACXAMN 331
V+VG + E++++ F G ++ V + + P GFA++EF ++ ++A +N
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEA-LQLN 152
Query: 332 GTEMLGATLKV 364
+E+ G LKV
Sbjct: 153 ESELHGRQLKV 163
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 35.9 bits (79), Expect = 0.017
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREF-DKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACXA 325
+VY G L + + L+ F D+ G L + + GF FI FE+ + + A
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 326 MNGTEMLGATLKVEISTK 379
MNG E+ G L++ ++++
Sbjct: 280 MNGVEVEGRALRLNLASE 297
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 35.9 bits (79), Expect = 0.017
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACXA 325
T VYV L+E + + L F +YG ++SV V + GF F+ F N + A+ A +
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMES 261
Query: 326 MNGTEM 343
+ G ++
Sbjct: 262 LCGLQL 267
Score = 35.1 bits (77), Expect = 0.031
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +2
Query: 149 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDAC 319
+G +YV L I LER F +G + S V GF F++F+ Q A A
Sbjct: 109 TGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSAR 168
Query: 320 XAMNGTEMLGATLKV 364
A++G+ + G L V
Sbjct: 169 SALHGSMVYGKKLFV 183
Score = 33.1 bits (72), Expect = 0.12
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACXA 325
+ +YV L E + + L F YG++ S V + GF F+ F N +E++ A
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363
Query: 326 MNGTEMLGATLKVEISTK 379
+NG + G + V ++ +
Sbjct: 364 LNGFLVDGKPIVVRVAER 381
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 35.9 bits (79), Expect = 0.017
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACXAM 328
++VG L +G +EDL++ F G++ V + NP G AF+ F +++A+ A +
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 329 NGTEMLGATLKVEIS 373
+ G V S
Sbjct: 276 KSPMINGKKCGVTAS 290
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 35.5 bits (78), Expect = 0.023
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACXAM 328
V V L E ++ DL F +G + V+VA++ GF F+ F + ++A+ A +
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274
Query: 329 NGTEMLGATLKVEIST 376
NG L+VE +T
Sbjct: 275 NGYGYDNLILRVEWAT 290
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.5 bits (78), Expect = 0.023
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACXA 325
R +VGGL ++ +ER F+++G++ + ++ GF F+ F++ A
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 326 MNGTEMLGATLKVE 367
MNG E+ G + +
Sbjct: 105 MNGQELDGRNITAQ 118
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 35.5 bits (78), Expect = 0.023
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACXAM 328
+YVGGL + + + L F +G + V L+ F F+ F ++A A M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 329 NGTEMLGATLKV 364
+G E+ G L V
Sbjct: 75 DGAELYGRVLTV 86
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 35.1 bits (77), Expect = 0.031
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACX 322
T VY+G + +E L F + G++ + + L+ P GF F+ F + ++ EDA
Sbjct: 34 TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVK 93
Query: 323 AMNGTEMLGATLKVE 367
++GT + ++V+
Sbjct: 94 YISGTILDDRPIRVD 108
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 35.1 bits (77), Expect = 0.031
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACXAM 328
+++G L + + L F + G+L SV V N P G+ FIEF + AE
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 329 NGTEMLGATLKVEIS 373
NGT+M G L ++
Sbjct: 86 NGTQMPGTELTFRLN 100
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 35.1 bits (77), Expect = 0.031
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +2
Query: 146 SSGGTR---VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQ 301
+ GG R ++VGGL I + + + FD++G + V V + P GF FI F++ +
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-E 173
Query: 302 EAEDACXAMNGTEMLGATLKVE 367
E+ D E+ G ++V+
Sbjct: 174 ESVDMVLHKTFHELNGKMVEVK 195
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 35.1 bits (77), Expect = 0.031
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +2
Query: 149 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAED 313
S + ++V G+ +E L + F +YG++ V V ++ P GFA++ F + +EAE
Sbjct: 18 SFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEK 77
Query: 314 ACXAMN 331
A +N
Sbjct: 78 ALLELN 83
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 35.1 bits (77), Expect = 0.031
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +2
Query: 143 MSSGGT--RVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQ 301
M+SG R +VGGL LE F +YG K+ + GF F+ F++ +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 302 EAEDACXAMNGTEMLGATLKV 364
+DA MNG ++ G ++ V
Sbjct: 61 AMKDAIEGMNGQDLDGRSITV 81
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 35.1 bits (77), Expect = 0.031
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +2
Query: 143 MSSGGT--RVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQ 301
M+SG R +VGGL LE F +YG K+ + GF F+ F++ +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 302 EAEDACXAMNGTEMLGATLKV 364
+DA MNG ++ G ++ V
Sbjct: 61 AMKDAIEGMNGQDLDGRSITV 81
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 35.1 bits (77), Expect = 0.031
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDAC 319
T+V+VGGL + E L + F++YG+ L +V +A G+ F+ F + + A AC
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRAC 82
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 35.1 bits (77), Expect = 0.031
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACX 322
T++Y G L + L + + V V N GFAF+ N+++
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 323 AMNGTEMLGATLKVEISTK 379
++GTE LG LKV + K
Sbjct: 145 NLDGTEYLGRALKVNFADK 163
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 34.3 bits (75), Expect = 0.053
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGT 337
T V GL + L + F + +L P GF FI FE+ +A+ A A+NG
Sbjct: 71 TCVSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 130
Query: 338 EMLGATLKVE 367
+ G + VE
Sbjct: 131 IVNGRLIFVE 140
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 34.3 bits (75), Expect = 0.053
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACXAM 328
+++VG L + + + +++ F KYG + + + G AF+++E ++A A ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 329 NGT-EMLGATLKVEI 370
NG +M G+T+ + +
Sbjct: 167 NGKHKMEGSTVPLVV 181
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 34.3 bits (75), Expect = 0.053
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACXAM 328
+++VG L + + + +++ F KYG + + + G AF+++E ++A A ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 329 NGT-EMLGATLKVEI 370
NG +M G+T+ + +
Sbjct: 167 NGKHKMEGSTVPLVV 181
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDAC 319
G +++ + ++L F +G + S V ++ F F+ +++ A++A
Sbjct: 348 GANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAI 407
Query: 320 XAMNGTEMLGATLKVEI 370
MNG + G LKV++
Sbjct: 408 DMMNGRHLGGKKLKVQL 424
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 33.9 bits (74), Expect = 0.071
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACX 322
GT++Y+ L G+ ED++ F + G L + + G A + F +A A
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166
Query: 323 AMNGTEMLGATLKVEI 370
N ++ G +K+EI
Sbjct: 167 RYNNVQLDGKLMKIEI 182
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 33.9 bits (74), Expect = 0.071
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +2
Query: 152 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 316
G R++VGGL + + + +G L + N G+AF +++ + A
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
Query: 317 CXAMNGTEMLGATLKV 364
C A+NG +M TL V
Sbjct: 433 CAALNGIKMGDKTLTV 448
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 33.5 bits (73), Expect = 0.093
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +2
Query: 170 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEMLG 349
V L I ++L R YG++ + ++ +IEF +++ A A +NG E+ G
Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAG 365
Query: 350 ATLKV 364
L++
Sbjct: 366 KKLQL 370
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 33.5 bits (73), Expect = 0.093
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACXA 325
T+++V + K +L + F +G++ S+ + G+AF+EF QEA +A A
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKA 728
Query: 326 MNGTEMLGATLKVE 367
+ T G L +E
Sbjct: 729 LASTHFYGRHLVLE 742
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 272 FAFIEFENLQEAEDACXAMNGTEMLGATLKVEISTK 379
F FI F + QEA+ A N T + + + VEI+ K
Sbjct: 11 FGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHK 46
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 33.5 bits (73), Expect = 0.093
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALN-PPGFAFIEFENLQEAEDACXA 325
+++VGGL + E+ + F+ YG + V + A N P GF F+ F++ ++A D+
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDSVLH 169
Query: 326 MNGTEMLGATLKVE 367
++ G ++V+
Sbjct: 170 KTFHDLSGKQVEVK 183
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 33.1 bits (72), Expect = 0.12
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +2
Query: 170 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEMLG 349
V L + E L + F G + + + A+IE+ N +EA A A+N TE+ G
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSIT-DSKHIAYIEYSNSEEAT-AALALNNTEVFG 412
Query: 350 ATLKVEIS 373
L VEI+
Sbjct: 413 RALNVEIA 420
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 33.1 bits (72), Expect = 0.12
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 269 GFAFIEFENLQEAEDACXAMNGTEMLGATLKVEISTK 379
G+ F+ F +EAE+A +NG E++G + ++ S +
Sbjct: 237 GYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLR 273
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 32.7 bits (71), Expect = 0.16
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACX 322
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 144
Query: 323 AMNGTEMLGATLKVEI 370
N ++ G +K+EI
Sbjct: 145 KYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 32.7 bits (71), Expect = 0.16
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACX 322
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 80
Query: 323 AMNGTEMLGATLKVEI 370
N ++ G +K+EI
Sbjct: 81 KYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 32.7 bits (71), Expect = 0.16
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACX 322
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 146
Query: 323 AMNGTEMLGATLKVEI 370
N ++ G +K+EI
Sbjct: 147 KYNDVQLDGKPMKIEI 162
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 32.7 bits (71), Expect = 0.16
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEM 343
+YVGGL I ++D+ +F +G++ S+ + L AF+ + + + AE A ++ +
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRI-LADKACAFVTYTSREGAEKAAQELSNRLV 288
Query: 344 L-GATLKV 364
+ G LK+
Sbjct: 289 INGQRLKL 296
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 32.3 bits (70), Expect = 0.22
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACX 322
TR++V + + + D F++YG++ +++ + G FI F + ED
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVED--- 147
Query: 323 AMNGTEMLGAT 355
M T LG T
Sbjct: 148 LMEDTHDLGGT 158
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDAC 319
G +++VG L + +DL F ++G + ++ +P GF F+ F A+
Sbjct: 239 GNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV- 297
Query: 320 XAMNGTEMLGATLKVEIST 376
A E+ G + ++ +T
Sbjct: 298 -ARRSHEICGQEVAIDSAT 315
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 32.3 bits (70), Expect = 0.22
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +2
Query: 200 EDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACXAMNGTEMLGATLKVE 367
ED+ F+KYG + + ++++ G FIE + +EA A ++ E G LKV+
Sbjct: 108 EDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVD 167
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 32.3 bits (70), Expect = 0.22
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDAC 319
T+V+VGGL KE + F KYG L +V ++ G+ F+ F++ + A AC
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 32.3 bits (70), Expect = 0.22
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACXAM 328
++V L + ++REF+ YG + V + + P G+AFIE+ + ++ + A
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 329 NGTEMLGATLKVEI 370
+G ++ G + V++
Sbjct: 200 DGQKIDGRRVLVDV 213
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 32.3 bits (70), Expect = 0.22
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACXAM 328
++YV L + K ++ F +YG + +++AL+ G+AF++F + A A A+
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 329 NG 334
NG
Sbjct: 268 NG 269
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 32.3 bits (70), Expect = 0.22
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACX 322
GT VY+ L +G+ ED+ + + G+L + + P G A + + +A A
Sbjct: 106 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMR 165
Query: 323 AMNGTEMLGATLKVEI 370
N + G +K+EI
Sbjct: 166 KYNNVLLDGRPMKLEI 181
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 31.9 bits (69), Expect = 0.28
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACX 322
GTR++V L +G+ ED+ F + G++ + + P G A + + +A A
Sbjct: 92 GTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALK 151
Query: 323 AMNGTEMLGATLKVEI 370
N + G +++EI
Sbjct: 152 KYNNVLLDGRPMRLEI 167
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 197 KEDLEREFDKYGKLNSVWVALN-PPGFAFIEFENLQEAEDACXAMNG 334
+ED++ E K+G +SV V + P G + F++ ++A+ AMNG
Sbjct: 430 EEDVKEESLKHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNG 476
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFEN 295
+++VGG+ + +E L++ F +YG + VA P GF F+ F N
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAN 56
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.9 bits (69), Expect = 0.28
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACXAM 328
++V L + + L+ F +G++ V +A++ P G ++EF+ +AE A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 329 NGTEMLGATLK 361
+G ++ G +K
Sbjct: 160 DGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.9 bits (69), Expect = 0.28
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACXAM 328
++V L + + L+ F +G++ V +A++ P G ++EF+ +AE A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 329 NGTEMLGATLK 361
+G ++ G +K
Sbjct: 160 DGAQIDGKVVK 170
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 31.5 bits (68), Expect = 0.38
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACX 322
T++YV GL + E L F+++G++ V + GF F+ F ++ A AC
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACE 68
Query: 323 AMNGT 337
N T
Sbjct: 69 NPNHT 73
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 31.5 bits (68), Expect = 0.38
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN--PPGFAFIEFENLQEAEDACXAMNG 334
+YV L I E++ F KYG + + + + G AF+ +E++ +A++A ++G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSG 79
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 31.5 bits (68), Expect = 0.38
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACXAM 328
V V L E + DL F +G + VA++ GF F+ F + ++A+ A +
Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235
Query: 329 NGTEMLGATLKVEIST 376
NG L+VE ST
Sbjct: 236 NGYGYDNLILRVEWST 251
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 31.5 bits (68), Expect = 0.38
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Frame = +2
Query: 146 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAE 310
+S ++VG L + L + F + + V + GF F+ F N Q+A+
Sbjct: 140 TSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 199
Query: 311 DACXAMNGTEMLGATLKVEISTK 379
A MNG + ++ +TK
Sbjct: 200 TAINEMNGKWLSSRQIRCNWATK 222
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 31.5 bits (68), Expect = 0.38
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAM-NGTE 340
+YVGGL + ++D+ +F +G++ S+ + L AF+ + + AE A + N
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRI-LAEKACAFVTYTTREGAEKAAEELSNRLV 288
Query: 341 MLGATLKV 364
+ G LK+
Sbjct: 289 VNGQRLKL 296
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 31.5 bits (68), Expect = 0.38
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP--GFAFIEFENLQEAEDACXAM 328
G + V L +GI + + R F +YG ++V AF++F+N A A +
Sbjct: 27 GVTLLVRHLPDGIPHDIVSRLFSQYGA-SAVRPCSGGKLRNAAFVDFKNEAFASQAHRQL 85
Query: 329 NGTEMLGATLKVEISTK 379
NG LG L+V+ + K
Sbjct: 86 NGLRFLGKVLQVQRANK 102
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 31.1 bits (67), Expect = 0.50
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACX 322
T++++GGL G L F +G + V ++ GF F+ F + A A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 323 AMNGTEMLGATLKV 364
M+G E+ G ++V
Sbjct: 95 EMDGKELNGRHIRV 108
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 31.1 bits (67), Expect = 0.50
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACX 322
T++++GGL G L F +G + V ++ GF F+ F + A A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 323 AMNGTEMLGATLKV 364
M+G E+ G ++V
Sbjct: 95 EMDGKELNGRHIRV 108
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 31.1 bits (67), Expect = 0.50
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACXA 325
+VYVG L + + L F K+G + S V + FAF+ F + +E DA +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALS 271
Query: 326 MNGTEMLGATLKV 364
NGT+ G + V
Sbjct: 272 FNGTQYEGRRIIV 284
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 30.7 bits (66), Expect = 0.66
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDACXA 325
VYV L I ++E EF +G + V L +AF+EFE++ E+A A
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 318
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 30.7 bits (66), Expect = 0.66
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDACXA 325
VYV L I ++E EF +G + V L +AF+EFE++ E+A A
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 377
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 295
+++VGGL + ++ F+ YG ++ + ++ P GF F+ F++
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDS 160
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 30.7 bits (66), Expect = 0.66
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACX 322
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNAVR 70
Query: 323 AMNGTEMLGATLKVE 367
M ++++
Sbjct: 71 QMQNFPFYDKPMRIQ 85
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 30.7 bits (66), Expect = 0.66
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACX 322
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNAVR 70
Query: 323 AMNGTEMLGATLKVE 367
M ++++
Sbjct: 71 QMQNFPFYDKPMRIQ 85
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 30.3 bits (65), Expect = 0.87
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACXA 325
T +Y+ L + +E L F +GK+ +A + GFAFIEFE+ A A
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLH 76
Query: 326 MNG 334
M+G
Sbjct: 77 MDG 79
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 30.3 bits (65), Expect = 0.87
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Frame = +2
Query: 191 IKKEDLEREFDKYGKLNSVWVALNP------PGFAFIEFENLQEAED 313
+K+ED+E F +YGK+NSV + + G A +EF ++A++
Sbjct: 127 VKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQN 173
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 30.3 bits (65), Expect = 0.87
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACXAM 328
+++ L + KE++++ F +G++ S+ + L+ P G AF++F+ + A A
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Query: 329 NGTEMLGATLK 361
+ +G LK
Sbjct: 623 DTASGVGVLLK 633
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACXAM 328
V V GL I LE F + G + ++ N GFAF++F ++ A
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 329 NGTEMLGATLKVE 367
NG+ + G + V+
Sbjct: 82 NGSTVGGRRITVK 94
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 30.3 bits (65), Expect = 0.87
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 269 GFAFIEFENLQEAEDACXAMNGTEMLGATLKVEISTK 379
GF F+ F N Q+A+ A MNG + ++ +TK
Sbjct: 194 GFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATK 230
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 30.3 bits (65), Expect = 0.87
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 269 GFAFIEFENLQEAEDACXAMNGTEMLGATLKVEISTK 379
GF F+ F N Q+A+ A MNG + ++ +TK
Sbjct: 190 GFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATK 226
>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 673
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 227 YGKLNSVWVALNPPGFAFIEFENLQE 304
+G +N +W LNPPG A I EN+ E
Sbjct: 405 FGAMN-MWFLLNPPGKATIHVENVDE 429
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACXA 325
++++ GL ++ L F+ +G+L V + ++ G+AF+E+ + A A
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 326 MNGTEMLGATLKVEIS 373
MNG + G + V+++
Sbjct: 343 MNGKIINGWMIVVDVA 358
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 29.9 bits (64), Expect = 1.1
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACX 322
+Y+ L E IKKE+L+R F ++G++ V VAL P G A++ F + A A
Sbjct: 12 IYIQNLNERIKKEELKRSLYCLFSQFGRILDV-VALKTPKLRGQAWVTFSEVTAAGHAVR 70
Query: 323 AM 328
M
Sbjct: 71 QM 72
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 272 FAFIEFENLQEAEDACXAMNGTEMLGATLKVEIS 373
+AF+EF + ++A+DA ++G + G+ + VE S
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEAS 38
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACXAM 328
VYVGGL + +E L F + G + +V+V + + FIE+ + ++A+ A +
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 329 NGTEMLGATLKV 364
N ++ G ++V
Sbjct: 87 NMIKLHGKPIRV 98
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 265
V+VG L +KK+ + +EF K+G++ SV + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +2
Query: 206 LEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACXAMNGTEMLGATLKVEI 370
LE+ FD G++ V+V + AF+ E + AED ++GT+++G T+ V+
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEG-EGAEDKALQLSGTDVVGWTVIVKP 191
Query: 371 S 373
S
Sbjct: 192 S 192
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 272 FAFIEFENLQEAEDACXAMNGTEMLGATLKVEIS 373
+AF+EF + ++A+DA ++G + G+ + VE S
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 38
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 316
T+V+VGGL +++ R FD++G++ + + G+ F+ F + A A
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRA 74
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 185 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXA 325
E +++ + F K+GK+ + + +N AF++F +EAE A A
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 185 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXA 325
E +++ + F K+GK+ + + +N AF++F +EAE A A
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 185 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEMLGATLKV 364
+ I ++ L F YG + + + N P A ++ + +AE A + G + G L+V
Sbjct: 255 DSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEV 314
Query: 365 EIS 373
S
Sbjct: 315 NFS 317
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 206 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEMLGATLKVEIS 373
L + F YG + + F+EF ++++A A MNG E+ G + +E S
Sbjct: 229 LRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIEFS 284
>At1g79880.3 68414.m09332 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 357
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +2
Query: 191 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 313
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.2 68414.m09331 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 345
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +2
Query: 191 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 313
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +2
Query: 191 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 313
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 126 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 172
>At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,
putative similar to SP|P07374 Urease (EC 3.5.1.5) (Urea
amidohydrolase) {Canavalia ensiformis}; contains Pfam
profile PF01979: Amidohydrolase family
Length = 838
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 436 VVVHSEVXEEAGSTTHTVAAAAGRTIVT 519
V +H++ E+G HT+ A GRTI T
Sbjct: 514 VNIHTDTLNESGFVEHTINAFRGRTIHT 541
>At1g05510.1 68414.m00563 expressed protein
Length = 241
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVW 250
G +++ G+ E I+++DLE+ YGK+ W
Sbjct: 121 GGFLFMPGVPEAIQRQDLEKVAKTYGKVYHFW 152
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = +2
Query: 158 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACX 322
T ++V GL + E L F ++G++ V + GF F+ + L+++
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 323 AMNGTEMLGATLKVE 367
M+G + G + E
Sbjct: 116 GMDGKFLDGWVIFAE 130
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +2
Query: 233 KLNSVWVALNPP-----GFAFIEFENLQEAEDACXAMNGTEM 343
K N +W+ ++P G+ FIEF QEA++A +G ++
Sbjct: 89 KENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKL 130
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 164 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 253
+YVGGL I ++D+ F YG++ S+ V
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 263 PPGFAFIEFENLQEAEDACXAMNGTEMLGATLKVEIS 373
P GF FI F++ +A A +++G + G + VE++
Sbjct: 47 PKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVA 83
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 27.9 bits (59), Expect = 4.6
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Frame = +2
Query: 155 GTRVYVGGLVEGIKKEDLEREFDKYG--KLNSVWVA-----LNPPGFAFIEFENLQEAED 313
GT ++V L L F +G K N + V NP F FI FE + +
Sbjct: 279 GTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGFISFETVASVQS 338
Query: 314 ACXAMNGTEMLGATLKVEISTK 379
A T + A K+ + K
Sbjct: 339 VLQAAKNTPFMLADRKLRVKEK 360
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +2
Query: 200 EDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACXAMNGTEMLGATLKVE 367
ED+ EF KYG+L + V N G ++ + +L+ A A ++NG G + E
Sbjct: 309 EDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCE 368
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 6.1
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 291 SNSM-KAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPP 151
S+SM KA+P S T S P LS S P++RP T TR P
Sbjct: 230 SSSMDKARPSLSSRPSTPTSRPQLSASSPNIIASRPNSRPSTPTRRSP 277
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 27.5 bits (58), Expect = 6.1
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 164 VYVGGLVEGIKKED---LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNG 334
++V GL E +K + L REF Y + + + + FAF F +LQ A A+NG
Sbjct: 37 LFVAGLPEDVKPREIYNLFREFPGY-ETSHLRSSDGAKPFAFAVFSDLQSAVAVMHALNG 95
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +2
Query: 143 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPG--FAFIEFENLQEAED 313
+ ++++GG + I E L +G L + +V+ N AF+E+ +
Sbjct: 35 VEDSSNKIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAFLEYTDGSVTLK 94
Query: 314 ACXAMNGTEMLGATL 358
AC +NG + G+ +
Sbjct: 95 ACAGLNGMRLGGSVI 109
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +2
Query: 191 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEMLGATLKVEI 370
+ L F YG++ V F+EF ++++A A MNG + G + ++
Sbjct: 194 VSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQF 253
Query: 371 S 373
S
Sbjct: 254 S 254
>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
similarity to dienelactone hydrolase [Rhodococcus
opacus] GI:23094407; contains Pfam profile PF01738:
Dienelactone hydrolase family
Length = 310
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 179 LVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACXAMNGTEM 343
L IKK + + L +++ G +E ++ E E+AC +NGTE+
Sbjct: 37 LASSIKKHITTSFYRRGSSLKNIYALETSDGAINVEVDD-DEEEEACELVNGTEV 90
>At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM
domain-containing protein low similarity to SP|P40748
Synaptotagmin III (SytIII) {Rattus norvegicus}; contains
Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
Length = 1027
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 202 FLLDSLDETADVHASTTRTHGLVLFMKIQLKFIYVNKN 89
FL + DE AD+ + H K+QL+ NKN
Sbjct: 626 FLKHTADELADLSVALVGNHAQASQSKLQLRIFLENKN 663
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV------ALNPPGFAFIEFENLQEAEDACX 322
+++VG L IKK + E F ++G + +V + GF FI + + A A
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKA-V 224
Query: 323 AMNGTEMLGATLKVEI 370
+G E G L V++
Sbjct: 225 EFDGVEFHGRILTVKL 240
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +2
Query: 161 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACXA 325
+++VGG+ + +++L+ F KYG + V + GF F+ F++ + ++
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 326 MNGTEMLGATLKVE 367
N +M ++++
Sbjct: 170 GNMIDMADTQVEIK 183
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,139,993
Number of Sequences: 28952
Number of extensions: 166600
Number of successful extensions: 736
Number of sequences better than 10.0: 183
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -