Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C20
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    48   1e-06
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    47   3e-06
SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces po...    26   4.0  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.2  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   6.9  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.1  

>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
 Frame = +1

Query: 256 IMEKLNSLTFQKITXIVTAVDSQPM-FDGGVLINVLGRLKCDEXP-PHLYMQTFVLXPLG 429
           I+EKL SL FQ++   ++ +D+QP    G V++ V G L  DE      Y Q F L    
Sbjct: 49  IVEKLVSLPFQRVQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNN 108

Query: 430 XSFYVQHDIFRL 465
            ++YV +D+FRL
Sbjct: 109 GNYYVLNDLFRL 120



 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 168 AQRANLVNMYNVETSFMTFEGVQLQG 245
           + R+ L ++Y  E S ++FEG QLQG
Sbjct: 21  SDRSQLSSLYR-EESMLSFEGAQLQG 45


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 25/81 (30%), Positives = 39/81 (48%)
 Frame = +1

Query: 238 CRAAVKIMEKLNSLTFQKITXIVTAVDSQPMFDGGVLINVLGRLKCDEXPPHLYMQTFVL 417
           C    +I  K+  L FQ    +++ VDS    +GG++I VLG +         + QTF L
Sbjct: 59  CHGQQEIHNKILDLDFQNCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFL 118

Query: 418 XPLGXSFYVQHDIFRLGIHDI 480
                 ++V +DIFR    D+
Sbjct: 119 AEQPNGYFVLNDIFRFLREDV 139


>SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 164

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = -3

Query: 311 AVTIXVIF*KVKLFNFS-IILTAALQLYSLKGHE*SF-NIVHINKICPLSXDHRTMCNIV 138
           ++ + +I   V LF+ + ++L +AL +  ++G    F  +  +++ICP+S   +   N  
Sbjct: 34  SIFLCIILGIVNLFHVTLVVLFSALTI--IEGVLLIFIELPFLSRICPVSDKFQAFTNAF 91

Query: 137 AQNLYR 120
           A N YR
Sbjct: 92  ASNYYR 97


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 92  FRLRCVYLSHQQKAQFQPEKFK 27
           FRL+  Y+SH +K+ F P+++K
Sbjct: 235 FRLK-KYISHSKKSAFSPQRWK 255


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 261 HNFNSSPAVVLPQRS*MKFQHCTY*QDLP 175
           H+F++   V +PQ+S    Q C+Y + LP
Sbjct: 116 HSFSNPRYVAVPQKSTSPNQVCSYCEPLP 144


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 323 WESTAVTIXVIF*KVKLFNFSIILTAALQLYSL 225
           W ST +   + F  +  +NFS ++ +++Q  SL
Sbjct: 718 WLSTVIFPLLCFTVISAYNFSTMIRSSMQFVSL 750


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,382
Number of Sequences: 5004
Number of extensions: 45102
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)