Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_C20
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1376 - 26528208-26528279,26529690-26529986 51 9e-07
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129... 40 0.002
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849... 38 0.009
01_06_0963 + 33441731-33442096,33442175-33442270 30 1.3
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028... 30 1.8
03_02_0170 + 6119667-6119912,6120032-6120169,6120311-6120421,612... 29 3.1
06_01_0740 - 5473895-5474061,5474153-5474399,5475207-5475336,547... 29 4.1
03_04_0091 + 17241555-17241602,17241685-17241822,17241901-172421... 28 7.1
>08_02_1376 - 26528208-26528279,26529690-26529986
Length = 122
Score = 50.8 bits (116), Expect = 9e-07
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +1
Query: 247 AVKIMEKLNSLTFQKITXIVTAVDSQPMF-DGGVLINVLGRLKCD-EXPPHLYMQTFVLX 420
A I KL SL F + + VD QP GG+L+ V G L+ + P + Q F L
Sbjct: 45 AAAIAGKLGSLPFAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLL 104
Query: 421 PLGXSFYVQHDIFRL 465
P G +FYVQ+D+FRL
Sbjct: 105 PAGGNFYVQNDMFRL 119
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 174 RANLVNMYNVETSFMTFEGVQLQGCC*NYGKIK*FDFSKNHXNSN 308
R LV++Y + S +TFEG Q G GK+ F++ H + N
Sbjct: 22 RPALVSLYQ-DGSMLTFEGQQFLGAAAIAGKLGSLPFAQCHHDIN 65
>02_03_0315 -
17610605-17610855,17611304-17611370,17612876-17612941,
17613037-17613158,17613245-17613428,17614262-17614494,
17614580-17614913,17615043-17615186,17615303-17615344
Length = 480
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +1
Query: 220 PLREYNCRAAVKIMEKLNS--LTFQKITXIVTAVDSQPMFDGGVLINVLGRLKCDEXPPH 393
P Y +V ME +N + + VDSQ GGV + V G L +
Sbjct: 48 PADRYGDMVSVTTMEAINEKIMAMDMSRAEIKTVDSQESLGGGVTVLVTGHLTVRDGVCR 107
Query: 394 LYMQTFVLXPLGXSFYVQHDIFR 462
+ Q+F L P ++V +D+FR
Sbjct: 108 EFSQSFFLAPQEKGYFVLNDMFR 130
>04_03_0630 -
18182681-18182931,18183397-18183463,18184899-18184964,
18185057-18185178,18185263-18185425,18186082-18186329,
18186418-18186751,18186857-18187000,18187079-18187144
Length = 486
Score = 37.5 bits (83), Expect = 0.009
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 250 VKIMEKLNS--LTFQKITXIVTAVDSQPMFDGGVLINVLGRLKCDEXPPHLYMQTFVLXP 423
V ME +N+ ++ + + AVD+Q GGV + V G L + + Q+F L P
Sbjct: 66 VTTMEAINAKIVSMDIVRAEIKAVDAQESLGGGVTVLVTGHLTGSDDVRREFSQSFFLAP 125
Query: 424 LGXSFYVQHDIFR 462
++V +DI R
Sbjct: 126 QEKGYFVLNDILR 138
>01_06_0963 + 33441731-33442096,33442175-33442270
Length = 153
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 247 AVKIMEKLNSLTFQKITXIVTAVDSQPM--FDGGVLINVLGRLK 372
A +I KL L F++ V VD QP F GG+L+ V G L+
Sbjct: 67 AEEIGRKLLGLPFEQCRHAVCTVDCQPTPSFPGGILVFVSGNLQ 110
>07_03_1180 -
24601631-24602142,24602518-24602581,24602811-24602876,
24602949-24603070,24603170-24603344,24603466-24603701,
24603781-24604129,24605009-24605146,24605242-24605289
Length = 569
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 256 IMEKLNSLTFQKITXIVTAVDSQPMFDGGVLINVLGRLKCDEXPPHLYMQTFVLXPL-GX 432
I ++ S F + VD+Q +GGV I V G + + H + Q+F L P
Sbjct: 64 INDEFLSTDFSSCLIKLENVDAQLSLNGGVHILVTGSIGHNGTMRHRFSQSFFLAPQESG 123
Query: 433 SFYVQHDIFR 462
++V +D+ R
Sbjct: 124 GYFVLNDMLR 133
>03_02_0170 +
6119667-6119912,6120032-6120169,6120311-6120421,
6120621-6120828,6120938-6121019,6121239-6121347,
6122175-6122291,6122378-6122602
Length = 411
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +3
Query: 90 KWRSIRSTMQS---VKVLCNNITHCSMIXAQRANLVNMYN-VETSFMTFEGVQL 239
++R+IR T S + +C+N HC I Q +LV + V S+M V+L
Sbjct: 347 RYRNIRGTSSSKVAINFVCSNSVHCDGIVMQDVSLVGEGSYVSCSYMNARVVEL 400
>06_01_0740 -
5473895-5474061,5474153-5474399,5475207-5475336,
5475874-5475951,5476192-5476337,5476661-5476906,
5477498-5477746,5478356-5478493,5479015-5479113,
5479456-5479641,5480477-5480896
Length = 701
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 126 KVLCNNITHCSMIXAQRANLVNMYNVETSFMTFEG 230
K LCNN T C + R N +N ++ F T G
Sbjct: 381 KALCNNCTDCGITGINRTNWLNNSDLTGCFDTKSG 415
>03_04_0091 +
17241555-17241602,17241685-17241822,17241901-17242198,
17242281-17242513,17242632-17242827,17242911-17243032,
17243100-17243165,17243373-17243436,17243851-17244176
Length = 496
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +1
Query: 274 SLTFQKITXIVTAVDSQPMFDGGVLINVLGRLKCDEXPPHLYMQTFVLXPL-GXSFYVQH 450
S+ F + D+Q GVLI V G L E + Q+F L P + V +
Sbjct: 70 SMDFSNYLTEIETADAQLSHQDGVLIVVTGSL-TSEGICRRFTQSFFLAPQESGGYVVLN 128
Query: 451 DIFR 462
DIFR
Sbjct: 129 DIFR 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,043,615
Number of Sequences: 37544
Number of extensions: 267983
Number of successful extensions: 443
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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