Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C20
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical pr...    72   4e-13
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    30   1.6  
AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related ...    28   4.9  
AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related ...    28   4.9  
AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related ...    28   4.9  

>Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical
           protein R05D11.3 protein.
          Length = 133

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 31/75 (41%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
 Frame = +1

Query: 256 IMEKLNSLTFQKITXIVTAVDSQPMFDGGVLINVLGRLKCDEXPPHLYMQTFVLXPLG-X 432
           I++K  +L F KI   +T +DSQP++DG + + VLG+LK DE P + + Q F+L P    
Sbjct: 58  ILQKFTTLGFTKIQRAITVIDSQPLYDGSIQVMVLGQLKTDEDPINPFSQVFILRPNNQG 117

Query: 433 SFYVQHDIFRLGIHD 477
           S+++ ++IFRL +H+
Sbjct: 118 SYFIGNEIFRLDLHN 132



 Score = 34.7 bits (76), Expect = 0.056
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 92  MALNPQYDAIGKGFVQQYYTLFD 160
           M+ NP Y+++ K F+Q YY+ FD
Sbjct: 1   MSFNPDYESVAKAFIQHYYSKFD 23



 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 183 LVNMYNVETSFMTFEGVQLQG 245
           L ++Y+ E S+MTFEG Q +G
Sbjct: 34  LSDLYDPENSYMTFEGQQAKG 54


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 205  KLHS*PLREYNCRAAVKIMEKLNSLTFQKITXIVTAVDSQPMFDGGVL--INVLGRLKCD 378
            K+   P R+Y+ +   KI EKLNSL   +I      V+   +    ++  I+VL +L   
Sbjct: 2709 KIAKLPARDYDNKLLAKIDEKLNSLPKDQIAETHRKVEDIKVTKADIVAQIDVLDKLPAK 2768

Query: 379  EXPPHL 396
            +   HL
Sbjct: 2769 DIDEHL 2774


>AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related
           export protein NXT1 protein.
          Length = 137

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 337 GGVLINVLGRLKCDEXPPHLYMQTFVLXPLGXSFYVQHDIFR 462
           GG+L+NV G +  D      + QT +L      + V+ D FR
Sbjct: 93  GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 134


>AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform b protein.
          Length = 131

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 337 GGVLINVLGRLKCDEXPPHLYMQTFVLXPLGXSFYVQHDIFR 462
           GG+L+NV G +  D      + QT +L      + V+ D FR
Sbjct: 87  GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 128


>AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform a protein.
          Length = 137

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 337 GGVLINVLGRLKCDEXPPHLYMQTFVLXPLGXSFYVQHDIFR 462
           GG+L+NV G +  D      + QT +L      + V+ D FR
Sbjct: 93  GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,728,995
Number of Sequences: 27780
Number of extensions: 265096
Number of successful extensions: 405
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)