Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_C20
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 44 8e-05
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 44 8e-05
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 42 5e-04
At1g27310.1 68414.m03327 nuclear transport factor 2 (NTF2), puta... 41 6e-04
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 41 6e-04
At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2), puta... 41 8e-04
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 40 0.001
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 37 0.013
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 35 0.039
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 35 0.039
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 31 0.64
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 44.0 bits (99), Expect = 8e-05
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +1
Query: 256 IMEKLNSLTFQKITXIVTAVDSQPMFDGGVLINVLGRLKCDEXPPHLYMQTFVLXPLGXS 435
I +K+ SL ++ T + D+Q + GV++ V GRL ++ + Q+F L P
Sbjct: 62 INDKILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRKKFSQSFFLAPQDKG 121
Query: 436 FYVQHDIFR 462
++V +D+FR
Sbjct: 122 YFVLNDVFR 130
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 44.0 bits (99), Expect = 8e-05
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +1
Query: 256 IMEKLNSLTFQKITXIVTAVDSQPMFDGGVLINVLGRLKCDEXPPHLYMQTFVLXPLGXS 435
I +K+ SL ++ T + D+Q + GV++ V GRL ++ + Q+F L P
Sbjct: 62 INDKILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRKKFSQSFFLAPQDKG 121
Query: 436 FYVQHDIFR 462
++V +D+FR
Sbjct: 122 YFVLNDVFR 130
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 256 IMEKLNSLTFQKITXI-VTAVDSQPMFDGGVLINVLGRLKCDEXPPHLYMQTFVLXPLGX 432
I E+L LT+ +T+ D+Q +GG L+ V G +E + QTF L P
Sbjct: 63 ISEELKRLTYGDCNSAEITSYDTQESHNGGFLLFVTGYFTLNERSRRKFTQTFFLAPQEK 122
Query: 433 SFYVQHDIFR 462
F+V +DI R
Sbjct: 123 GFFVLNDILR 132
>At1g27310.1 68414.m03327 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 122
Score = 41.1 bits (92), Expect = 6e-04
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +1
Query: 256 IMEKLNSLTFQKITXIVTAVDSQPMFD-GGVLINVLGRLK-CDEXPPHLYMQTFVLXPLG 429
I+ KL L FQ+ +T VD QP GG+L+ V G L+ E + Q F L
Sbjct: 48 IVAKLTGLPFQQCKHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLISNQ 107
Query: 430 XSFYVQHDIFRL 465
++YV +DIFRL
Sbjct: 108 GNYYVFNDIFRL 119
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 156 SMIXAQRANLVNMYNVETSFMTFEGVQLQG 245
S A R LV++Y E S +TFEG ++QG
Sbjct: 16 STFDANRPGLVSLYQ-EGSMLTFEGQKIQG 44
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +1
Query: 256 IMEKLNSLTFQKITXIVTAVDSQPMFDGGVLINVLGRLKCDEXPPHLYMQTFVLXPLGXS 435
I E++ S ++ + DSQ + GV+ V G L E + Q+F L PL S
Sbjct: 62 INEQIMSFDYEISKIQILTADSQASYMNGVVTLVTGLLTVKEGQRMRFSQSFFLVPLNGS 121
Query: 436 FYVQHDIFR 462
++V +D+FR
Sbjct: 122 YFVLNDVFR 130
>At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 126
Score = 40.7 bits (91), Expect = 8e-04
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +1
Query: 256 IMEKLNSLTFQKITXIVTAVDSQPMFDG-GVLINVLGRLK-CDEXPPHLYMQTFVLXPLG 429
I+ KL SL FQ+ ++ VD QP G+L+ V G L+ E + Q F L P
Sbjct: 51 IVAKLTSLPFQQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTP 110
Query: 430 X-SFYVQHDIFRL 465
SFYV +DIFRL
Sbjct: 111 QGSFYVFNDIFRL 123
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +1
Query: 256 IMEKLNSLTFQKITXIVTAVDSQPMFDGGVLINVLGRLKCDEXPPHLYMQTFVLXPLGXS 435
I +K+ +L + I+ + VD+Q GG ++ V G L + + QTF L P
Sbjct: 66 IDKKIMALGYGVISAEIATVDTQESHGGGYIVLVTGYLTGKDSVRRTFSQTFFLAPQETG 125
Query: 436 FYVQHDIFR 462
++V +D+FR
Sbjct: 126 YFVLNDMFR 134
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 304 VTAVDSQPMFDGGVLINVLGRLKCDEXPPHLYMQTFVLXPLGXSFYVQHDIFR 462
+T+V SQ G+L+ V G L +E P + Q F L P + V D+FR
Sbjct: 341 ITSVTSQDSLKQGILVVVYGYLTFNERPARHFTQVFFLVPQEKGYIVCTDMFR 393
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 35.1 bits (77), Expect = 0.039
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 274 SLTFQKITXIVTAVDSQPMFDGGVLINVLGRLKCDEXPPHL-YMQTFVLXPLGXSFYVQH 450
SL F I V ++S ++GGVL+ V G +K E ++QTF L P ++V
Sbjct: 4 SLNFTAIE--VKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFVLS 61
Query: 451 DIF 459
D+F
Sbjct: 62 DVF 64
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 35.1 bits (77), Expect = 0.039
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 274 SLTFQKITXIVTAVDSQPMFDGGVLINVLGRLKCDEXPPHL-YMQTFVLXPLGXSFYVQH 450
SL F I V ++S ++GGVL+ V G +K E ++QTF L P ++V
Sbjct: 63 SLNFTAIE--VKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFVLS 120
Query: 451 DIF 459
D+F
Sbjct: 121 DVF 123
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 256 IMEKLNSLTFQKITXIVTAVDSQPMFDGGVLINVLGRLKCDEXPPHLYMQTFVLXPLGXS 435
I +++ S+ ++ + DSQ GV+ V G + ++ + Q+F L S
Sbjct: 62 INDQIMSIDYKSSRIEILTADSQSTLKNGVVTLVTGLVIGNDGGRRKFSQSFFLVSRNGS 121
Query: 436 FYVQHDIFR 462
++V +D FR
Sbjct: 122 YFVLNDTFR 130
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,488,872
Number of Sequences: 28952
Number of extensions: 227863
Number of successful extensions: 353
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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