Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_C19
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 188 3e-48
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 179 1e-45
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 30 1.6
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 29 2.7
09_02_0395 - 8536630-8537678,8537716-8537783,8538110-8538204 28 4.8
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 188 bits (458), Expect = 3e-48
Identities = 91/132 (68%), Positives = 105/132 (79%), Gaps = 1/132 (0%)
Frame = +3
Query: 99 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGR 275
VHFKNT ETA AIRK+PL +A RYL++VI K+ IPFRR+ GGVGR AQAK + QGR
Sbjct: 24 VHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGR 83
Query: 276 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSS 455
WP KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A RRRTYRAHGRINPYMSS
Sbjct: 84 WPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSS 143
Query: 456 PCHIEVCLXERE 491
PCHIE+ L E+E
Sbjct: 144 PCHIELILSEKE 155
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 29 MGRYSREPDNPAKSCKARGSNLR 97
M +YSRE +NP KS KA G +LR
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLR 23
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 179 bits (436), Expect = 1e-45
Identities = 91/146 (62%), Positives = 107/146 (73%), Gaps = 2/146 (1%)
Frame = +3
Query: 60 LRNHAKRVVQTSAVHF-KNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGR 236
LR H K +V V NT ETA A+RK+PL +A RYL++VI K+ IPFRR+ GGVGR
Sbjct: 22 LRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYLEDVIAHKQAIPFRRYCGGVGR 81
Query: 237 CAQAKQFGTT-QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRR 413
AQ K + QGRWP KSA F+L LL+NAESNAD K LDVD L + HIQVN+A RRR
Sbjct: 82 TAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRR 141
Query: 414 TYRAHGRINPYMSSPCHIEVCLXERE 491
TYRAHGRINPYMSSPCH+E+ L E+E
Sbjct: 142 TYRAHGRINPYMSSPCHVELILSEKE 167
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +2
Query: 29 MGRYSREPDNPAKSCKARGSNLR 97
MG+YS EP NP KS KA G +LR
Sbjct: 1 MGKYSTEPSNPTKSAKAMGRDLR 23
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 210 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQ 383
R +G V RC R K EF Q+ + +E S + + L + + I H+
Sbjct: 1011 RNLSGRVRRCRMHDIIRLLALR--KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLS 1068
Query: 384 VNRAPCLR 407
+ APCLR
Sbjct: 1069 GSSAPCLR 1076
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +3
Query: 171 LKNVIEKKECIPFRRFNGGVGRCAQAKQ--FGTTQGRWPKKSAEFLLQLLRNAESNAD-- 338
L N++E E R GR A+ Q + RWP ++AE RN E NA+
Sbjct: 400 LDNMVEMHETQVDNRLQDEAGRDARFWQPSLDDSLDRWPNETAE---DAERNWEDNAEEL 456
Query: 339 -NKTLDVDRLVIDHIQ 383
++T++ D DH+Q
Sbjct: 457 HSETMEDDAREHDHLQ 472
>09_02_0395 - 8536630-8537678,8537716-8537783,8538110-8538204
Length = 403
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Frame = -2
Query: 287 FLGPATLCCAKLLC--LSTATNAAVEATEWNTLFLFNHVFEVTNSTTERHLSDCHCGLIC 114
F+ A C LL AT A+ AT + + N V + GLIC
Sbjct: 286 FVAVALSCVFGLLISFFGFATRKAISATAFTVTGVVNKFLTVAINVLIWDKHSSPFGLIC 345
Query: 113 VLKVNSGGLNHALCMISQGYPAPE 42
+L +GG+ + + +G AP+
Sbjct: 346 LLFTIAGGVLYQQSVTKKGITAPQ 369
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,188,308
Number of Sequences: 37544
Number of extensions: 302562
Number of successful extensions: 779
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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