Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C19
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.55 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   1.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.1  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -2

Query: 203 NTLFLFNHVFEVTNSTTERHLSDCHCGLICVLKV 102
           N  FL + +F+         LSD   GL C + V
Sbjct: 312 NARFLMDSMFDFAERVNSLRLSDAELGLFCSVVV 345


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 27  LWVVTLGSRITLRNHAKRVVQTSAVH 104
           L + T+G +I  R H +R+++   VH
Sbjct: 272 LCIQTIGGQIKPRKHEQRLLRNVGVH 297


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 27  LWVVTLGSRITLRNHAKRVVQTSAVHFK 110
           +W+  LGSR+   +HA   ++ SAV  K
Sbjct: 679 IWL--LGSRLDWEDHASSPLEPSAVPSK 704


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,779
Number of Sequences: 438
Number of extensions: 3100
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)