Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_C19
(585 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi... 183 7e-47
At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi... 182 2e-46
At4g20910.1 68417.m03031 double-stranded RNA binding protein-rel... 29 2.3
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein ... 28 4.0
At5g18420.1 68418.m02168 expressed protein non-consensus GC dono... 28 4.0
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila... 27 7.0
At2g19410.1 68415.m02264 protein kinase family protein contains ... 27 7.0
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 27 9.2
At2g29050.1 68415.m03531 rhomboid family protein contains PFAM d... 27 9.2
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 27 9.2
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac... 27 9.2
>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
to GB:P51413 from [Arabidopsis thaliana]; similar to
ESTs gb|L33542 and gb|AA660016
Length = 176
Score = 183 bits (446), Expect = 7e-47
Identities = 90/132 (68%), Positives = 104/132 (78%), Gaps = 1/132 (0%)
Frame = +3
Query: 99 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGR 275
VHFKNT ETA AIRK+PL +A RYL++VI K+ IPF RF GVGR AQAK + QGR
Sbjct: 24 VHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGR 83
Query: 276 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSS 455
WP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A RRRTYRAHGRINPYMS+
Sbjct: 84 WPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSN 143
Query: 456 PCHIEVCLXERE 491
PCHIE+ L E+E
Sbjct: 144 PCHIELILSEKE 155
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +2
Query: 29 MGRYSREPDNPAKSCKARGSNLR 97
M +YS+EPDN KSCKARG++LR
Sbjct: 1 MVKYSQEPDNITKSCKARGADLR 23
>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
to ribosomal protein GI:19101 from [Hordeum vulgare]
Length = 175
Score = 182 bits (443), Expect = 2e-46
Identities = 90/132 (68%), Positives = 104/132 (78%), Gaps = 1/132 (0%)
Frame = +3
Query: 99 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGR 275
VHFKNT ETA AIRK+PL +A RYL++VI K+ IPF RF GVGR AQAK + QGR
Sbjct: 24 VHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGR 83
Query: 276 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSS 455
WP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A RRRTYRAHGRINPYMS+
Sbjct: 84 WPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSN 143
Query: 456 PCHIEVCLXERE 491
PCHIE+ L E+E
Sbjct: 144 PCHIELILSEKE 155
Score = 40.7 bits (91), Expect = 7e-04
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +2
Query: 29 MGRYSREPDNPAKSCKARGSNLR 97
M +YS+EPDN KSCKARGS+LR
Sbjct: 1 MVKYSQEPDNQTKSCKARGSDLR 23
>At4g20910.1 68417.m03031 double-stranded RNA binding
protein-related / DsRBD protein-related contains weak
similarity to Pfam profile PF00035: Double-stranded RNA
binding motif
Length = 942
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +1
Query: 1 RYFLSERN--NYGSLLSGAG*PCEI-MQSAWFKPPL 99
R LSER NY LL G P E M++A+FKPPL
Sbjct: 662 RSLLSERPCLNYNILLLGVKGPSEERMEAAFFKPPL 697
>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 449
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 291 RISWASDPVLCQTALLEHSD 232
R+SWASD +LCQ L D
Sbjct: 9 RVSWASDSMLCQVKLFLSDD 28
>At5g18420.1 68418.m02168 expressed protein non-consensus GC donor
splice site at exon 1, unknown (C40) protein, Homo
sapiens, EMBL:AF103798
Length = 441
Score = 28.3 bits (60), Expect = 4.0
Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Frame = +3
Query: 111 NTYETAMAIRKMPLR--RAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPK 284
N Y A+ M L V L +E + + C AKQ Q R +
Sbjct: 333 NDYYEALGNMDMSLHSMEVVNRLTTAVELPKDFIRMYITNCISSCENAKQDKYMQNRLVR 392
Query: 285 KSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRR 410
FL L+RN N + ++V I+ +V A L R
Sbjct: 393 LVCVFLQSLIRNKIINVKDLFIEVQAFCIEFSRVREAAGLFR 434
>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
to nodule inception protein GI:6448579 from (Lotus
japonicus); contains Pfam profile: PF02042 RWP-RK domain
Length = 974
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 259 AQHRVAGPRNPPNSSCSY 312
AQ A P++PP+SSCS+
Sbjct: 765 AQGTAAAPKSPPSSSCSH 782
>At2g19410.1 68415.m02264 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 801
Score = 27.5 bits (58), Expect = 7.0
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 27 LWVVTLGSRITLRNHAKRVVQTSAVHFKNTYETA-MAIRKM--PLRRAVRYLKNVIEKKE 197
+WVVT G R+ + + VV+ K YET + KM R RY ++ K
Sbjct: 84 MWVVTAGDRLPVEEVEESVVEMYVRDVKKEYETVFVPFLKMCKSTRSTKRYFRSRRTKGT 143
Query: 198 CIP 206
+P
Sbjct: 144 GVP 146
>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower] {Brassica
oleracea}
Length = 408
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +2
Query: 197 VYSIPSLQRRRWSLCSS 247
V SIPSL RR W L SS
Sbjct: 43 VVSIPSLSRRSWRLASS 59
>At2g29050.1 68415.m03531 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 389
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 376 WSITSLSTSKVLLSAFDSAFLNNCKRNSA 290
W + ++ + + L A S F+NNC +NSA
Sbjct: 57 WLVPAIVVANIALFAI-SMFINNCPKNSA 84
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 264 TQGRWPKKSAEFLLQLLRNAESN 332
+ RWPK E L+++ +N E+N
Sbjct: 394 SSSRWPKTEVEALIRIRKNLEAN 416
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 498
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 264 TQGRWPKKSAEFLLQLLRNAESN 332
+ RWPK E L+++ +N E+N
Sbjct: 317 SSSRWPKTEVEALIRIRKNLEAN 339
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,825,979
Number of Sequences: 28952
Number of extensions: 233094
Number of successful extensions: 589
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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