Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C18
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   1.8  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   4.1  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    25   7.2  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/32 (31%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = -1

Query: 653  RVRCIAL---FRCINNISTWCRLLWSPFRSRS 567
            R+RC+A+   ++C+ ++S+  R  WS  ++R+
Sbjct: 1396 RIRCLAIHIYYQCLRHLSSSVRSYWSEVKNRA 1427


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 522  QKETHLRRVKQKKSGRPRPERAPKKSAPSGDVVDAPEQS 638
            QK+TH  +  +K S R + E+  K +  + ++ + PE+S
Sbjct: 1128 QKKTHSSKSDKKSSRRRKNEKRRKLNEQNPNIRNVPERS 1166


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/77 (16%), Positives = 31/77 (40%)
 Frame = +3

Query: 411 YEQMYAEKRXAMLVREVXRLDNQIASMRTELXSLXXLQKETHLRRVKQKKSGRPRPERAP 590
           Y+ +Y + +   +   +  +D  +  ++ E       +K    ++  +KK   P+P+   
Sbjct: 189 YQTIYHQAKLDAITEPLKFIDQPLPIIKAENKEAAPAKKAE--KKKDEKKKNAPKPQAEA 246

Query: 591 KKSAPSGDVVDAPEQSY 641
               P   +  AP  S+
Sbjct: 247 PAKPPKHPLASAPNGSF 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,429
Number of Sequences: 5004
Number of extensions: 38051
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)