Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C18
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)                     29   4.4  
SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_16873| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/72 (18%), Positives = 37/72 (51%)
 Frame = +3

Query: 432 KRXAMLVREVXRLDNQIASMRTELXSLXXLQKETHLRRVKQKKSGRPRPERAPKKSAPSG 611
           ++ + L +++  +  Q++ +  E   +   +K+   +++K++   +P+P + PK+ A   
Sbjct: 464 EKLSQLQQQLISVHEQLSKLTGESVLVTKTKKKPE-KKIKKEPPAKPKPVKPPKQQATKT 522

Query: 612 DVVDAPEQSYAS 647
              + P +  AS
Sbjct: 523 PKAEKPPKKSAS 534


>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
          Length = 783

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
 Frame = +3

Query: 417 QMYAEKRXAMLVREVXRLDNQIASMRTELXSL---XXLQKETHLRRVKQKKSGRP--RPE 581
           Q   +K   + V EV ++  ++    T+         ++K+ +++R+K+    +   + E
Sbjct: 558 QEIKDKNPGISVTEVSKVAGEMWKNLTDKSKWEEKAAIEKQKYVQRMKEYNENKKNDKEE 617

Query: 582 RAPKKSAPSGDVVDAPEQSYAS 647
            +PKK +PS     AP++  +S
Sbjct: 618 SSPKKKSPSKKASKAPKEEKSS 639


>SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 866

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 307 MQDTSSNNFISGLHCVXYCEI--KVSLKLTIYRTLSLIXIALSEKIQVKAMFFFLPGK 140
           M  T+ N ++  +H   Y  +  +   KL IY T +L  I+  + +    ++FF PGK
Sbjct: 659 MAVTAVNRYLQVVHANYYRRLFTRKRTKLFIYGTWALASISPIQYLASGELYFFNPGK 716


>SB_16873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 471 DNQIASMRTELXSLXXLQKETHLRRVKQKKSGRPRPERAP 590
           +N+I    T L  +   +K    R +K+  SG  +PE+ P
Sbjct: 59  ENEIRPRTTTLERILARRKSITNRNIKEASSGEKKPEKFP 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,354,171
Number of Sequences: 59808
Number of extensions: 274720
Number of successful extensions: 717
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)