Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C18
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF043692-2|AAB97531.1|  253|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z35663-13|CAA84729.1|  234|Caenorhabditis elegans Hypothetical p...    27   8.8  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    27   8.8  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   8.8  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   8.8  
AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical
           protein F41E7.1 protein.
          Length = 516

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -3

Query: 615 HLHLVQTSLEPFQVEVCQIFFVSLAEGVFLSAVXLSXRVPS--SLMRSGYLILXLPALAW 442
           H++ V  + E   V    + F+ L  G+F + +  + R+P     +  G +I  +     
Sbjct: 52  HVNPVNATNEDVTVRSIFVIFILLVAGIFAAKISKALRLPPLFGCLALGIIIKNITVFDQ 111

Query: 441 LFVFP 427
            FVFP
Sbjct: 112 FFVFP 116


>AF043692-2|AAB97531.1|  253|Caenorhabditis elegans Hypothetical
           protein C17F3.3 protein.
          Length = 253

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 519 LQKETHLRRVKQKKSGRPRPERAPKKSA-PSGDV 617
           ++KET     K++K   P+   APKK   P G+V
Sbjct: 170 VKKETKKEEKKEEKKEEPKKSEAPKKEGEPKGEV 203


>Z35663-13|CAA84729.1|  234|Caenorhabditis elegans Hypothetical
           protein T04A8.10 protein.
          Length = 234

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
 Frame = +3

Query: 426 AEKRXAMLVREVX--RLDNQIASMRTELXSLXXLQKETHLRRVKQKKSGRPRPE 581
           AE+  A + RE+   R+D Q+A+++ +L  +  +QKE  L + ++++  R  PE
Sbjct: 159 AEELEAAVQRELELERIDEQMAALK-KLNDME-IQKEKRLNQARERRLKREEPE 210


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 549  KQKKSGRPRPERAPKKSAPSGDVVDAPEQSYASD 650
            K+     P  E  PK++APS    D P+++  S+
Sbjct: 3583 KEAAPSEPTQENVPKEAAPSEPTKDVPKEAAPSE 3616


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 549  KQKKSGRPRPERAPKKSAPSGDVVDAPEQSYASD 650
            K+     P  E  PK++APS    D P+++  S+
Sbjct: 3583 KEAAPSEPTQENVPKEAAPSEPTKDVPKEAAPSE 3616


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 549  KQKKSGRPRPERAPKKSAPSGDVVDAPEQSYASD 650
            K+     P  E  PK++APS    D P+++  S+
Sbjct: 3583 KEAAPSEPTQENVPKEAAPSEPTKDVPKEAAPSE 3616


>AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical
           protein C54G6.2 protein.
          Length = 700

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 531 THLRRVKQKKSGRPRPERAPKKSAPSGDVVDAPEQSYASD 650
           TH RR    ++ R  P R P+ SAP+   V A   S   D
Sbjct: 81  THYRRRSSTEAHRYHPPRQPRSSAPTHHRVPADYPSDEED 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,389,859
Number of Sequences: 27780
Number of extensions: 216059
Number of successful extensions: 614
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)