Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C18
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.9  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   7.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   7.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 486  SMRTELXSLXXLQKETHLRRVKQKKSGRPRPERAPKKSAPSGDVVDAPEQSYASD 650
            S RT +  L     E    R      GRP PER P++  P+ D+  +P     +D
Sbjct: 1336 SRRTPVPRLAQDSSEDESYRGPSASGGRPVPER-PER-VPTVDLSPSPSDRGRND 1388


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 648 PMHSSVPVHQQHLHL 604
           P H  +P++Q H HL
Sbjct: 62  PEHRDLPIYQSHHHL 76


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 568 DLDLKGLQRSLHQVEMLLM 624
           D D+ GL++  H+V  LLM
Sbjct: 129 DGDIAGLRKKKHKVNPLLM 147


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 447 LVREVXRLDNQIASMRTELXSL 512
           ++  V RLDN +A + TE+  L
Sbjct: 477 ILDSVDRLDNLMAQVNTEMTHL 498


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 543 RVKQKKSGRPRPERAPKKSAPSGDVVDAP 629
           +V    +  P  +R P +   SGDV D P
Sbjct: 305 KVNNDSNSLPFIDRTPIEIINSGDVQDVP 333


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 543 RVKQKKSGRPRPERAPKKSAPSGDVVDAP 629
           +V    +  P  +R P +   SGDV D P
Sbjct: 305 KVNNDSNSLPFIDRTPIEIINSGDVQDVP 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,922
Number of Sequences: 438
Number of extensions: 2537
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)