Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C15
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1112 - 9157776-9158149,9158248-9161158                           29   3.0  
04_04_1582 - 34590698-34591199,34593849-34594690                       27   7.0  
05_07_0236 - 28582157-28582552,28582639-28582911,28583324-285835...    27   9.2  

>06_01_1112 - 9157776-9158149,9158248-9161158
          Length = 1094

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 93  LINRCSNIQIS*LDYYYPPQSSLAASVH 10
           ++N CSN++   L   Y PQ SL A +H
Sbjct: 859 ILNTCSNLEFRALVLQYMPQGSLEALLH 886


>04_04_1582 - 34590698-34591199,34593849-34594690
          Length = 447

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 388 HFIRINGLSIDGSRSKG*IHDHNQVNNGN 302
           +FIR+N ++ +  RS   IHD   VNNG+
Sbjct: 318 YFIRLNSMNRERRRSS--IHDITSVNNGD 344


>05_07_0236 -
           28582157-28582552,28582639-28582911,28583324-28583560,
           28583653-28583694,28583782-28583964,28584393-28584524,
           28585605-28586057
          Length = 571

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 481 YCKKQLXLPLL*TXYLRPIIKMYNSRYTDALHFIRINGLSIDGS 350
           YCK  +   L  T   +   +++ S     L F +++G+SI GS
Sbjct: 187 YCKPNILFQLDGTILAQTSTRVWGSGLLQWLEFTKLSGISIQGS 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,453,441
Number of Sequences: 37544
Number of extensions: 140988
Number of successful extensions: 194
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)