Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C15
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)              29   2.3  
SB_1952| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
          Length = 586

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 371 WSIYRRFAIEGLNSRSQSGKQ 309
           W++Y   + E  N+RSQSGKQ
Sbjct: 116 WAVYGLLSFEDRNTRSQSGKQ 136


>SB_1952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 393 LCTLYVLMVYLSTVRDRRVKFTITIR*TMETLNNTKRLIYIYVITYXSVAVFKNYSRIFV 214
           +CT  V   YL+     +VKF   +R      +NTK  I + ++T  S+     Y+ +FV
Sbjct: 168 ICTFIVFFCYLAIWI--KVKFFTPLRNARRDASNTKLTITLSLVTLASLICSLPYN-LFV 224

Query: 213 I 211
           I
Sbjct: 225 I 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,079,278
Number of Sequences: 59808
Number of extensions: 195962
Number of successful extensions: 254
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)