Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C13
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   1.5  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    25   4.4  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   5.9  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   7.8  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 157 ILQHRRPRLPLMQLEAPCSFNFCXLRA 77
           I Q     LP + L +PCSF  C LRA
Sbjct: 48  IAQKSNISLPFLTL-SPCSFTICSLRA 73


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 184 MESTXPQCHILQHRRPRLPLMQLEAPCSF 98
           M+S   Q ++L   RP LPL     P  F
Sbjct: 88  MDSLSHQIYLLHKNRPTLPLKPTNQPTRF 116


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -2

Query: 337 HHLMAWGLPWQQQSTVTQC 281
           H ++ WG  W++  T  +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 163 CHILQHRRPRLPLMQLEAPCSFNFCXLRAI 74
           CH L HR+  L  M+  + C    C L A+
Sbjct: 647 CHHLYHRQCLLQWMETRSICPVCRCHLPAV 676


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,167,310
Number of Sequences: 5004
Number of extensions: 17201
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)