Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C13
         (347 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   1.8  
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)                  27   5.5  
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               26   7.3  

>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 147 CCNIWHWGXVDSISGSRARFQLXGNSGRKHSRCCTSILRK 266
           C  ++H G ++ I   + R Q+ G+  R    C TS+ ++
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45


>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
          Length = 534

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 199 AREPL-MESTXPQCHILQHRRPRLPLMQLEAPCSFNFCXLRAI 74
           +REP    S  PQ H+L  +R  L + ++   CS   C +  I
Sbjct: 57  SREPFDSRSKLPQKHLLNSKRRALAIAKILLACSPEHCSMSFI 99


>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 159 WHWGXVDSISGSRARFQLXGNSGRKHSRCCTSILR 263
           + W  VDSI+ S+A+F     +   H    T  LR
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLR 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,406,998
Number of Sequences: 59808
Number of extensions: 153752
Number of successful extensions: 383
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)