Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_C11
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.085
SB_55463| Best HMM Match : OPA3 (HMM E-Value=0) 33 0.15
SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20) 31 1.0
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) 29 4.2
SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_3240| Best HMM Match : Sec8_exocyst (HMM E-Value=0.48) 28 5.6
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17) 28 7.4
SB_26352| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 34.3 bits (75), Expect = 0.085
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Frame = +3
Query: 72 SGVTVSDACKTTYEEIK-KDKKHRYVVFYIRDE----------KQIDVETVGERNAEYEQ 218
SG+ + D Y+ ++ K+K H++ F I D+ K++D T E A ++Q
Sbjct: 4 SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63
Query: 219 FLEDLQKGGTGECRYGLFDFEY 284
LE L E RY L+D +
Sbjct: 64 MLEKL---SDSEPRYILYDLNF 82
>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
Length = 387
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 310 EASKKQKLFLMSWCPDTAXVXXXMLYSSSFDALKK 414
E + + KL L+ WCPD + M+ +++F +KK
Sbjct: 323 EGADRSKLVLIFWCPDNCEIKSRMVSAATFQDVKK 357
>SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 31.5 bits (68), Expect = 0.60
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 310 EASKKQKLFLMSWCPDTAXVXXXMLYSSSFDALKK 414
E +++ KL L+ WCPD + M+ +++F + K
Sbjct: 76 EGAERSKLVLIFWCPDNCGIKNKMVSAATFKEVMK 110
>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
Length = 151
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +3
Query: 72 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV-----ETVGERNAEYEQ--FLED 230
SG+ V D + +K K H+Y +F I DE + V ++V E ++ F +
Sbjct: 4 SGIKVDDESLKLSQTMKSMKTHKYAIFKICDEANMVVIDQTFKSVVTNTREEDRAIFYQM 63
Query: 231 LQKGGTGECRYGLFDFEY 284
++K E RY L+D ++
Sbjct: 64 VEKLSDREPRYILYDMKF 81
>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -3
Query: 283 YSKSNRPYLHSPVP-PFCRS--SRNCSYSALRSP 191
YS +RPY HSPV P+C S R YS + P
Sbjct: 112 YSPVDRPYCHSPVDRPYCHSPVDRPYCYSPVDHP 145
>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
Length = 540
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = -2
Query: 332 SFCFLLASDVXLALV----RVFKVKQAISAFPGTALLQILEELFVFGVAFANRLDVDLFL 165
S CFL + V L L+ R F + + FP + + + + F +R VD+FL
Sbjct: 441 SMCFLSRAHVDLFLIACSCRCFPSRSHVDVFPIAFSCRCVSHHVLMSMCFPSRAHVDVFL 500
Query: 164 V 162
+
Sbjct: 501 I 501
>SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 692
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/62 (29%), Positives = 23/62 (37%)
Frame = +1
Query: 409 KKSLXRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRP 588
++ L + P DRP + P RS S Y RD A + C D R
Sbjct: 447 RQKLIHLARKTPRDRPRARAHDTDQPSDPCQRSADQSPYPTQRDSQPGAGKRPCSDAGRH 506
Query: 589 RH 594
RH
Sbjct: 507 RH 508
>SB_3240| Best HMM Match : Sec8_exocyst (HMM E-Value=0.48)
Length = 643
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 202 TPNTNSSSRICRRAVPGNADMAC 270
+P T SSR C VPG+AD C
Sbjct: 14 SPRTGRSSRSCSIPVPGHADHHC 36
>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
Length = 409
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 470 QEAVEEKLRATDRQ*TAFTHEL--ATKPNPLSDTPALTTRGH 589
+E K+ AT+ AFTH+L KP +SD P + +G+
Sbjct: 22 EETPPIKIEATNHHAKAFTHDLENLAKPLKVSDVPNVFLQGY 63
>SB_26352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 382 LYSSSFDALKKSLXRSSEVHPSDRPLGSVSGG-RRREAPRHRSPINSI--YTRAR 537
L + FD + K S E++P D + +++ R++A R IN++ YT+ R
Sbjct: 66 LKEAGFDEIVKKYRDSKEINPEDLDVQNITSSLTRKQAEAVRRRINTLNEYTKKR 120
>SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 289 CVYSKSNRPYLHSPVPPFCRSSRNCSYSALRS 194
CVY PY+ S +PP +S S LRS
Sbjct: 292 CVYGWVALPYMSSTLPPVAYTSSGLSAGPLRS 323
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,577,778
Number of Sequences: 59808
Number of extensions: 345222
Number of successful extensions: 1083
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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