Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C08
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       75   6e-16
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.36 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.83 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 74.9 bits (176), Expect = 6e-16
 Identities = 33/90 (36%), Positives = 57/90 (63%)
 Frame = +3

Query: 348 RNDKTYRRSYTHAKPPYSYISLITMAIQNNPSRMLTLSEIYQFIMDLFPFYRQNQQRWQN 527
           RN + Y+ +    +PP++Y SLI  +I  +P + LTL+EIY +  + F ++R+N   W+N
Sbjct: 493 RNREFYKNA--DVRPPFTYASLIRQSIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKN 550

Query: 528 SIRHSLSFNDCFVKVPRTPDKPGKGSFWTL 617
           ++RH+LS + CF++V        KG+ WT+
Sbjct: 551 AVRHNLSLHKCFMRVENV-----KGAVWTV 575


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 423 AIQNNPSRMLTLSEIYQFIMDLFPFYRQNQQRW 521
           A Q +  R+L +SEI   I+D+ P  +   Q W
Sbjct: 564 ASQPDKDRVLVISEIQMVIVDVIPTDKNPVQLW 596


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 536 SDRVLPALLVLSVEREQIHDELVDFGERQ 450
           +DR+L    + S+E+   H+ +V  GERQ
Sbjct: 356 ADRMLDMGFLPSIEKMVDHETMVPLGERQ 384


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 384 RACRSGGTSCRCGPAAALRW 325
           ++ R    S RC  A+ LRW
Sbjct: 12  KSFRESRCSVRCSAASGLRW 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,300
Number of Sequences: 438
Number of extensions: 3188
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)