BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P01_F_C07 (620 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 144 7e-36 SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 144 9e-36 SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 28 0.95 SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 28 1.3 SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 1.7 SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 2.9 SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 26 3.8 SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 5.1 SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 25 6.7 SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 8.8 >SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|Schizosaccharomyces pombe|chr 1|||Manual Length = 252 Score = 144 bits (350), Expect = 7e-36 Identities = 70/141 (49%), Positives = 101/141 (71%) Frame = +3 Query: 195 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 374 K A++ LKGR+ EVSLADLQ D E +FRK +L E +QG++ L +F+G+ +T+DKLR Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRS 112 Query: 375 MVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAITKKMCEII 554 +V+KWQT IEA+ + TTDGY+ RVF IGFT + + +KT YAQ +Q+RAI +KM ++I Sbjct: 113 LVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVI 172 Query: 555 TRDVTNSELREVVNXLIPDSI 617 ++ +RE+V LIP+ I Sbjct: 173 QNQTSSCSMRELVQKLIPEVI 193 Score = 38.3 bits (85), Expect = 9e-04 Identities = 12/20 (60%), Positives = 18/20 (90%) Frame = +1 Query: 88 IVDPFTRKDWYDVKAPLYVQ 147 +VDPF+RK+WYD+KAP + + Sbjct: 20 VVDPFSRKEWYDIKAPAFFE 39 Score = 25.4 bits (53), Expect = 6.7 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +2 Query: 137 SMFSKRQVGTTLVNRTQXNENCFGRIEGK 223 + F + VG TLVNRT +N ++G+ Sbjct: 36 AFFEVKNVGKTLVNRTAGLKNANDSLKGR 64 >SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|Schizosaccharomyces pombe|chr 1|||Manual Length = 252 Score = 144 bits (349), Expect = 9e-36 Identities = 70/141 (49%), Positives = 99/141 (70%) Frame = +3 Query: 195 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 374 K A++ LKGR+ EVSLADLQ D E SFRK +L E +QG++ L +F+G D+T+DKLR Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRS 112 Query: 375 MVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAITKKMCEII 554 +V+KWQ+ IEAN + TTDGY+ R+F IGFT++ +KT YAQ +Q+RAI +KM ++I Sbjct: 113 LVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVI 172 Query: 555 TRDVTNSELREVVNXLIPDSI 617 ++E+V LIP+ I Sbjct: 173 QNQANGCSMKELVQKLIPEVI 193 Score = 39.9 bits (89), Expect = 3e-04 Identities = 13/20 (65%), Positives = 18/20 (90%) Frame = +1 Query: 88 IVDPFTRKDWYDVKAPLYVQ 147 +VDPF+RKDWYD+KAP + + Sbjct: 20 VVDPFSRKDWYDIKAPAFFE 39 Score = 25.4 bits (53), Expect = 6.7 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +2 Query: 137 SMFSKRQVGTTLVNRTQXNENCFGRIEGK 223 + F + VG TLVNRT +N ++G+ Sbjct: 36 AFFEVKNVGKTLVNRTAGLKNANDSLKGR 64 >SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces pombe|chr 2|||Manual Length = 1019 Score = 28.3 bits (60), Expect = 0.95 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 1/102 (0%) Frame = +3 Query: 192 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 371 TK+A KG +V++ L+ DAE + + F I EY++ N D T K Sbjct: 91 TKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK-- 144 Query: 372 WMVKKWQTLIE-ANIDVXTTDGYVLRVFCIGFTNKDSLSQRK 494 + +W ++ E + D + C+ ++ L+ K Sbjct: 145 -FINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIK 185 >SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 308 Score = 27.9 bits (59), Expect = 1.3 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Frame = +3 Query: 225 VFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 398 VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143 Query: 399 IEANIDVXTT 428 +E + D+ TT Sbjct: 144 LETSKDLETT 153 >SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1273 Score = 27.5 bits (58), Expect = 1.7 Identities = 10/36 (27%), Positives = 19/36 (52%) Frame = -3 Query: 228 KLFPSILPKQFSLXWVRLTSVVPTCLLLNIERSLDI 121 K+ + K+ ++ W +L V C +N+E S+ I Sbjct: 649 KVLDMVEVKKLNILWEKLLEYVSVCFFINVEESVRI 684 >SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 522 Score = 26.6 bits (56), Expect = 2.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 392 LPFFNHPPELIGCEVHAVEVAEHITS 315 L H PEL+ C +VA+H+TS Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206 >SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 438 Score = 26.2 bits (55), Expect = 3.8 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -2 Query: 286 LRKDLSASVSACRSARETSKTLPFNPSEAIFVALGTVDKRGADLPL 149 + KD S + +A SA E +P +FV GTV +DLP+ Sbjct: 332 VNKD-SENQNAGESADEKMSVVPLKKYSHVFVYDGTVHANQSDLPI 376 >SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe|chr 2|||Manual Length = 882 Score = 25.8 bits (54), Expect = 5.1 Identities = 12/46 (26%), Positives = 21/46 (45%) Frame = +3 Query: 369 RWMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYA 506 ++ W L+ T GYV+R GFT+ ++ + K +A Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840 >SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces pombe|chr 2|||Manual Length = 1309 Score = 25.4 bits (53), Expect = 6.7 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = +2 Query: 452 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNHKENV 544 LHW+ L+ +Q + P H+GQ S + NV Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194 >SPCC417.08 |tef3||translation elongation factor eEF3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1047 Score = 25.0 bits (52), Expect = 8.8 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = -1 Query: 371 PELIGCEVHAVEVAEHITSL 312 PELI C H EV E I SL Sbjct: 216 PELINCIAHPEEVPETIHSL 235 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,467,522 Number of Sequences: 5004 Number of extensions: 49879 Number of successful extensions: 134 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 132 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 273658928 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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