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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C07
         (620 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)         105   2e-23
SB_26711| Best HMM Match : I-set (HMM E-Value=0)                       32   0.43 
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)                 29   3.0  
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              29   3.0  
SB_4210| Best HMM Match : JTB (HMM E-Value=5.8)                        29   3.0  
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          27   9.3  
SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)                 27   9.3  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score =  105 bits (253), Expect = 2e-23
 Identities = 48/75 (64%), Positives = 62/75 (82%)
 Frame = +3

Query: 393 TLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAITKKMCEIITRDVTN 572
           TLIEA +DV TTDGY+LR+FCIGFT +     +KT YA+HTQ++AI KKM +IITR+V+ 
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61

Query: 573 SELREVVNXLIPDSI 617
           ++L+EVVN LIPDSI
Sbjct: 62  NDLKEVVNKLIPDSI 76


>SB_26711| Best HMM Match : I-set (HMM E-Value=0)
          Length = 327

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +3

Query: 81  EEXCRPIHSQRLVRCQGSALCSARGKSAPRLSTVPXATKIASEGLKGRVFEVSLADLQAD 260
           E  C  I  + ++  +GS  C  R +    LST         +G +G  FE  L D++ +
Sbjct: 61  ESSCTLIIQEAIINDEGSYRCVVRNELGSALSTAEVLVNEREKG-EGPRFEERLRDVRVE 119

Query: 261 TDAERSFR 284
              E SF+
Sbjct: 120 IGREASFK 127


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 225  VFEVSLADLQADTDAERSFRKFRLIAEYVQ 314
            +F  + +D+QA+++    FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205


>SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)
          Length = 924

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 25/88 (28%), Positives = 41/88 (46%)
 Frame = -2

Query: 427 VVFTSMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACR 248
           V  T + +  + C F T+  SL   R +      ++R      +  N    L  +++A R
Sbjct: 101 VFVTDLRSKAKTCEFGTLQDSLIKDRIVCGIDSDSIR----ERLLRNTELTLDTAINAVR 156

Query: 247 SARETSKTLPFNPSEAIFVALGTVDKRG 164
           +A ETSKT   N  +   +A G ++KRG
Sbjct: 157 AA-ETSKTQIENLKDGASLAAGALNKRG 183


>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 1102

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -2

Query: 412  MLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSA--SVSACR 248
            ++ SM +C ++ + +SL   R +   +  +L PC Y  ++++L + +    S+S CR
Sbjct: 948  VVMSMSLCRYVHVVMSLCPCRYVHVVMSMSLCPCRYVVMSMSLCRYIHVVMSMSLCR 1004


>SB_4210| Best HMM Match : JTB (HMM E-Value=5.8)
          Length = 427

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
 Frame = +3

Query: 108 QRLVRCQGSALCSARGKSAPRLSTVPXATKIASEGLKGRVFEVSLADLQADTDAERSF-- 281
           Q  V C G +      +   R  T      +A +     + +  +AD +++ D ER+   
Sbjct: 159 QTKVNCHGGSEFHGGSEIHSRPLTKDSGLMVALKSQSSSICKFKMADSESE-DQERTIIT 217

Query: 282 RKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 389
           + FRL   Y     +L   HG++++   L+  +K W
Sbjct: 218 QLFRLGHSYDDIVGLLSKCHGINISVRTLKRRLKDW 253


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 286 LRKDLSASVSACRSARETSKTLPFNPSEAIFV 191
           LRK L    S  +  RE  + L FNP E+ +V
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYV 333


>SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 328 STLRPCTYSAINLNLRKDLSASVSACRSARETSKTLPFNPSEAIF 194
           S LR   Y AI + L  D   +       ++T    P+NP++A+F
Sbjct: 331 SVLRAAMYGAIAVLLYPDPEITSKLGTRPQDTFPNTPWNPADAVF 375


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 240 GKLRKLFPSILPKQFSLXWVRLTSVVPTCLLLNIER 133
           GK+ +  P  LP++  +   R  SV+  C+LL + R
Sbjct: 226 GKVVRSLPKNLPRRVKVMIARAWSVLACCILLRVAR 261


>SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)
          Length = 340

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +3

Query: 231 EVSLADLQADTDAERS--FRKFRLIAEYV-QGRNVLCNFHGMDLTTDKLRWMVKKWQTL 398
           E+  A L+ D D+  +  F +F  +A  + QG+ ++ NF    + TD + + V  W TL
Sbjct: 186 EIKEAMLEVDVDSSGTVDFFEFLCVARLITQGKALVNNFQLSIVQTDGITFDVFDWSTL 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,196,797
Number of Sequences: 59808
Number of extensions: 388937
Number of successful extensions: 965
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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