BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P01_F_C07 (620 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21) 105 2e-23 SB_26711| Best HMM Match : I-set (HMM E-Value=0) 32 0.43 SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3 SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12) 29 3.0 SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45) 29 3.0 SB_4210| Best HMM Match : JTB (HMM E-Value=5.8) 29 3.0 SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0 SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3 SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 27 9.3 SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05) 27 9.3 >SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21) Length = 147 Score = 105 bits (253), Expect = 2e-23 Identities = 48/75 (64%), Positives = 62/75 (82%) Frame = +3 Query: 393 TLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAITKKMCEIITRDVTN 572 TLIEA +DV TTDGY+LR+FCIGFT + +KT YA+HTQ++AI KKM +IITR+V+ Sbjct: 2 TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61 Query: 573 SELREVVNXLIPDSI 617 ++L+EVVN LIPDSI Sbjct: 62 NDLKEVVNKLIPDSI 76 >SB_26711| Best HMM Match : I-set (HMM E-Value=0) Length = 327 Score = 31.9 bits (69), Expect = 0.43 Identities = 19/68 (27%), Positives = 30/68 (44%) Frame = +3 Query: 81 EEXCRPIHSQRLVRCQGSALCSARGKSAPRLSTVPXATKIASEGLKGRVFEVSLADLQAD 260 E C I + ++ +GS C R + LST +G +G FE L D++ + Sbjct: 61 ESSCTLIIQEAIINDEGSYRCVVRNELGSALSTAEVLVNEREKG-EGPRFEERLRDVRVE 119 Query: 261 TDAERSFR 284 E SF+ Sbjct: 120 IGREASFK 127 >SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1974 Score = 29.5 bits (63), Expect = 2.3 Identities = 11/30 (36%), Positives = 21/30 (70%) Frame = +3 Query: 225 VFEVSLADLQADTDAERSFRKFRLIAEYVQ 314 +F + +D+QA+++ FR+F L+ EYV+ Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205 >SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12) Length = 924 Score = 29.1 bits (62), Expect = 3.0 Identities = 25/88 (28%), Positives = 41/88 (46%) Frame = -2 Query: 427 VVFTSMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACR 248 V T + + + C F T+ SL R + ++R + N L +++A R Sbjct: 101 VFVTDLRSKAKTCEFGTLQDSLIKDRIVCGIDSDSIR----ERLLRNTELTLDTAINAVR 156 Query: 247 SARETSKTLPFNPSEAIFVALGTVDKRG 164 +A ETSKT N + +A G ++KRG Sbjct: 157 AA-ETSKTQIENLKDGASLAAGALNKRG 183 >SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45) Length = 1102 Score = 29.1 bits (62), Expect = 3.0 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Frame = -2 Query: 412 MLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSA--SVSACR 248 ++ SM +C ++ + +SL R + + +L PC Y ++++L + + S+S CR Sbjct: 948 VVMSMSLCRYVHVVMSLCPCRYVHVVMSMSLCPCRYVVMSMSLCRYIHVVMSMSLCR 1004 >SB_4210| Best HMM Match : JTB (HMM E-Value=5.8) Length = 427 Score = 29.1 bits (62), Expect = 3.0 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Frame = +3 Query: 108 QRLVRCQGSALCSARGKSAPRLSTVPXATKIASEGLKGRVFEVSLADLQADTDAERSF-- 281 Q V C G + + R T +A + + + +AD +++ D ER+ Sbjct: 159 QTKVNCHGGSEFHGGSEIHSRPLTKDSGLMVALKSQSSSICKFKMADSESE-DQERTIIT 217 Query: 282 RKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 389 + FRL Y +L HG++++ L+ +K W Sbjct: 218 QLFRLGHSYDDIVGLLSKCHGINISVRTLKRRLKDW 253 >SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 561 Score = 28.7 bits (61), Expect = 4.0 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 Query: 286 LRKDLSASVSACRSARETSKTLPFNPSEAIFV 191 LRK L S + RE + L FNP E+ +V Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYV 333 >SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 682 Score = 27.5 bits (58), Expect = 9.3 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = -2 Query: 328 STLRPCTYSAINLNLRKDLSASVSACRSARETSKTLPFNPSEAIF 194 S LR Y AI + L D + ++T P+NP++A+F Sbjct: 331 SVLRAAMYGAIAVLLYPDPEITSKLGTRPQDTFPNTPWNPADAVF 375 >SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) Length = 1494 Score = 27.5 bits (58), Expect = 9.3 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -3 Query: 240 GKLRKLFPSILPKQFSLXWVRLTSVVPTCLLLNIER 133 GK+ + P LP++ + R SV+ C+LL + R Sbjct: 226 GKVVRSLPKNLPRRVKVMIARAWSVLACCILLRVAR 261 >SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05) Length = 340 Score = 27.5 bits (58), Expect = 9.3 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Frame = +3 Query: 231 EVSLADLQADTDAERS--FRKFRLIAEYV-QGRNVLCNFHGMDLTTDKLRWMVKKWQTL 398 E+ A L+ D D+ + F +F +A + QG+ ++ NF + TD + + V W TL Sbjct: 186 EIKEAMLEVDVDSSGTVDFFEFLCVARLITQGKALVNNFQLSIVQTDGITFDVFDWSTL 244 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,196,797 Number of Sequences: 59808 Number of extensions: 388937 Number of successful extensions: 965 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 894 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 964 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1536271375 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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