Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C07
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   179   2e-45
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           178   2e-45
At5g04780.1 68418.m00494 SEC14 cytosolic factor-related contains...    29   3.3  
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    28   5.7  
At2g21630.1 68415.m02573 transport protein, putative similar to ...    27   7.6  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  179 bits (435), Expect = 2e-45
 Identities = 86/142 (60%), Positives = 110/142 (77%)
 Frame = +3

Query: 192 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 371
           TKIASEGLK RVFEVSLADLQ D D   ++RK RL AE VQGRNVLC F GMD TTDKLR
Sbjct: 54  TKIASEGLKHRVFEVSLADLQGDED--NAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLR 111

Query: 372 WMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAITKKMCEI 551
            +VKKWQTLIEA++DV TTD Y LR+FCI FT + +   ++TCYAQ +Q+R I +KM +I
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDI 171

Query: 552 ITRDVTNSELREVVNXLIPDSI 617
           + R+ ++ +L+++V   IP++I
Sbjct: 172 MVREASSCDLKDLVAKFIPEAI 193



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = +1

Query: 91  VDPFTRKDWYDVKAP 135
           VDPF++KDWYDVKAP
Sbjct: 21  VDPFSKKDWYDVKAP 35


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  178 bits (434), Expect = 2e-45
 Identities = 87/142 (61%), Positives = 110/142 (77%)
 Frame = +3

Query: 192 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 371
           TKIASEGLK RVFEVSLADLQ D D   ++RK RL AE VQGRNVL  F GMD TTDKLR
Sbjct: 54  TKIASEGLKHRVFEVSLADLQNDED--NAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLR 111

Query: 372 WMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAITKKMCEI 551
            +VKKWQTLIEA++DV TTDGY LR+FCI FT + +   ++TCYAQ +Q+R I +KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEI 171

Query: 552 ITRDVTNSELREVVNXLIPDSI 617
           + ++ ++ +L+E+V   IP++I
Sbjct: 172 MVKEASSCDLKELVAKFIPEAI 193



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = +1

Query: 91  VDPFTRKDWYDVKAP 135
           VDPF++KDWYDVKAP
Sbjct: 21  VDPFSKKDWYDVKAP 35


>At5g04780.1 68418.m00494 SEC14 cytosolic factor-related contains
           Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; contains Pfam profile PF01535:
           PPR repeat (three copies)
          Length = 864

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 29/114 (25%), Positives = 51/114 (44%)
 Frame = -2

Query: 472 LLVKPMQKTRRTYPSVVFTSMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAIN 293
           +L + MQ+       V F+S+L+   VC     H  L       +KL  T    + + ++
Sbjct: 342 ILFEKMQQDGMHPNEVTFSSLLS---VCG----HTGLVEEGRRFFKLMRTTYGLSPNVVH 394

Query: 292 LNLRKDLSASVSACRSARETSKTLPFNPSEAIFVALGTVDKRGADLPLAEHRAE 131
            +   D+         A E  K++PF+P+ +I+ +L    +   +L LAE  AE
Sbjct: 395 YSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAE 448


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = -1

Query: 554 NDFTH-FLCDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCXHINVGFDESL 390
           N F H  L D S+++   V   A  +A+ + I  ++ +DT N ++G  H+N  F E L
Sbjct: 430 NKFYHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -2

Query: 391 CHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 239
           CHF T+H  L  + + PW + +  RP   + + L +   L  +     +AR
Sbjct: 238 CHF-TLHSVLEELGNSPWPVAADHRPARCTGVALRIAASLLGACFPGSAAR 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,189,651
Number of Sequences: 28952
Number of extensions: 267291
Number of successful extensions: 764
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)