Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C03
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    52   4e-09
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   1.2  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   5.0  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 52.0 bits (119), Expect = 4e-09
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
 Frame = +2

Query: 290 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 469
           +F +  L    L  +  SG+ KP+ IQ + +P+   G DL+  A++G+GKT  F +  + 
Sbjct: 159 SFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIH 218

Query: 470 KL--------NLNNGLQ--VMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVN 616
            L          NN  Q  V+I++PTRE+   I D  K+  +++  + V  + GG S N
Sbjct: 219 NLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKF-AYNSTVKVAVIYGGTSTN 276


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 461 ALEKLNLNNGLQVMI 505
           A EKLN+N+GLQ+ +
Sbjct: 239 AYEKLNVNDGLQLWV 253


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 217 CRYVFSS*YKKQHKDS*CSNSGKCYVH 297
           C+  F   Y      S C N+G+C ++
Sbjct: 25  CKSFFGRTYNNISSISECKNNGECVIN 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,156
Number of Sequences: 336
Number of extensions: 3092
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)