Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_C03
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 90 3e-19
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 74 2e-14
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 65 1e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 64 2e-11
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 63 4e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 62 7e-11
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 59 5e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 57 3e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 56 3e-09
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 53 3e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 52 1e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 49 7e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 48 9e-07
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 48 2e-06
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 46 4e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 46 6e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 44 2e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 44 3e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 44 3e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 39 7e-04
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 39 7e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 34 0.020
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 29 0.58
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 27 2.3
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 27 3.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 3.1
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 26 4.1
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 26 5.4
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 5.4
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 25 7.2
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 25 7.2
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 25 9.5
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 25 9.5
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 89.8 bits (213), Expect = 3e-19
Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Frame = +2
Query: 257 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTG 436
+T DV F L L G+ +GF++PSPIQ +P+ G D+L AK+GTG
Sbjct: 34 KTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTG 93
Query: 437 KTVVFSIIALEKLNLNNG-LQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSV 613
KT F I +LEK++ +Q +IL PTRE+ V K +G H + V GG ++
Sbjct: 94 KTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGK-HMNVKVMVTTGGTTL 152
Query: 614 NEXIXKFXKKVH 649
+ I + VH
Sbjct: 153 RDDIIRLNDTVH 164
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 74.1 bits (174), Expect = 2e-14
Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Frame = +2
Query: 254 TRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGT 433
T + DV V + F M L E L G+ + G++ PS +Q + G D++ +A+SGT
Sbjct: 12 TTSEDVNAVSS--FEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGT 69
Query: 434 GKTVVFSIIALEKLNLN-NGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLS 610
GKT FSI L+ ++L+ Q +IL+PTRE+ I +V+ +G H + +GG S
Sbjct: 70 GKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGD-HMNVQCHACIGGTS 128
Query: 611 VNEXIXKFXKKVH 649
V I K H
Sbjct: 129 VGNDIKKLDYGQH 141
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 64.9 bits (151), Expect = 1e-11
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Frame = +2
Query: 290 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 469
TF M L L G+ + GF++PS IQ + D+L +A+SGTGKT FSI L+
Sbjct: 20 TFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQ 79
Query: 470 KLNLN-NGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVE--XVMGGLSVNEXIXKFXK 640
K++ + Q +IL PTRE+ I V+ +G +NVE +GG V + +
Sbjct: 80 KIDTSLKQCQALILAPTRELAQQIQKVVVALGDL---MNVECHACIGGTLVRDDMAALQA 136
Query: 641 KVH 649
VH
Sbjct: 137 GVH 139
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 64.1 bits (149), Expect = 2e-11
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Frame = +2
Query: 308 LSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLN- 484
LS L L +GF KP PIQ +P GFD++ +A +G+GKT+ F I LE N
Sbjct: 129 LSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNV 188
Query: 485 --NGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNEXIXKFXKKVH 649
+Q +++ PTRE+ IC + I + V + GGL+V + K H
Sbjct: 189 DAKYVQALVVAPTRELAHQICQHFELI-KPSPNIRVMSITGGLAVQKQQRLLNKHPH 244
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 62.9 bits (146), Expect = 4e-11
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Frame = +2
Query: 278 VENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSI 457
+ + F LL L + SGF+ PS +Q +P G D+L +AKSG GKT VF +
Sbjct: 48 IHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVL 107
Query: 458 IALEKLNLNNG-LQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNEXIXKF 634
L+++ +G + V++L TRE+ I + + + + GG+++ + + F
Sbjct: 108 STLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAF 167
Query: 635 XKK 643
K
Sbjct: 168 KDK 170
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 62.1 bits (144), Expect = 7e-11
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Frame = +2
Query: 293 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 472
F SM L++ L + GF+ P+PIQ +PL G D++ A++G+GKT F I +E
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 473 LN---LNNGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNE 619
L N+ + +IL+P RE+ V+K S L ++GG+S+ E
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDF-SKGTDLRSVAIVGGVSLEE 181
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 59.3 bits (137), Expect = 5e-10
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Frame = +2
Query: 248 NSTRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKS 427
N++ T D++ F+ + LSE + GF+ + IQ +P G D+L AK+
Sbjct: 81 NASSTSDIE-----KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKT 135
Query: 428 GTGKTVVFSIIALE-----KLNLNNGLQVMILTPTREIXAXICDVIKQ-IGSHHKGLNVE 589
G+GKT+ F I +E K NG V+I++PTRE+ I V K+ + HH+ +
Sbjct: 136 GSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGI- 194
Query: 590 XVMGGLSVNEXIXKFXKKVH 649
V+GG + K K V+
Sbjct: 195 -VIGGANRRAEADKLVKGVN 213
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 56.8 bits (131), Expect = 3e-09
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Frame = +2
Query: 257 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTG 436
+ + + + +F SM LS L GL + GF+ P+ IQ +PL G D++ A +G+G
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSG 308
Query: 437 KTVVFSIIALEKLNLN----NGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGG 604
KT F + LE+L +V+IL PTRE+ V +I S + V +GG
Sbjct: 309 KTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIAS-FTDIMVCLCIGG 367
Query: 605 LSV 613
LS+
Sbjct: 368 LSL 370
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 56.4 bits (130), Expect = 3e-09
Identities = 28/95 (29%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Frame = +2
Query: 287 VTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIAL 466
++F S+ + ++ + + GF+K +P+Q + +PL DL++EA +G+GKT+ + +
Sbjct: 1 MSFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCF 60
Query: 467 EKLNLNN----GLQVMILTPTREIXAXICDVIKQI 559
+K+ + GL +I+ PTRE+ I +V K++
Sbjct: 61 DKVTRRDTDETGLGALIVAPTRELATQIFNVTKEL 95
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 53.2 bits (122), Expect = 3e-08
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Frame = +2
Query: 290 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVP--LGKCGFDLLLEAKSGTGKTVVFSIIA 463
+F + L L G+ S FQKPS IQ +P L +++ +++SGTGKT F++
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 464 LEKLNLN-NGLQVMILTPTREIXAXICDVIKQIGSH 568
L +++ + Q + L P+RE+ I DV+ ++G +
Sbjct: 175 LSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY 210
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 51.6 bits (118), Expect = 1e-07
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Frame = +2
Query: 344 GFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKL-NLNNGLQVMILTPTR 520
GF+ P+PIQ +P+ D++ A++G+GKT F++ +++L N + ++L PTR
Sbjct: 65 GFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTR 124
Query: 521 EIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNEXIXKFXKKVH 649
E+ I + + IG G+ ++GG+ + KK H
Sbjct: 125 ELAYQISEQFEAIGG-SIGVRSVVIVGGMDMVTQAVALSKKPH 166
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 48.8 bits (111), Expect = 7e-07
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Frame = +2
Query: 293 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 472
F + L++ T + L ++ F + IQ +P G D+L AK+G+GKT+ F + +E
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 473 LNLN-----NGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNE 619
L +GL ++++PTRE+ + + +IG H + ++GG + E
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLH-SFSAGLIIGGNNYKE 153
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 48.4 bits (110), Expect = 9e-07
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Frame = +2
Query: 290 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 469
TF+ L + F+KP+ +Q +PL G DL+ +A++G+GKT + I LE
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 470 KL-------NLNNGLQVMILTPTREIXAXICDVIKQI 559
L G+ ++L PTRE+ + +V++++
Sbjct: 75 LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKL 111
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 47.6 bits (108), Expect = 2e-06
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Frame = +2
Query: 257 RTRDVQIVENVTFTSML-LSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGT 433
+ R + + VT S LS T++ + S G++KP+ IQ +P G D++ AK+G+
Sbjct: 407 KIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGS 466
Query: 434 GKTVVF------SIIALEKLNLNNGLQVMILTPTREIXAXI 538
GKT+ F I L G +I+TPTRE+ I
Sbjct: 467 GKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 46.4 bits (105), Expect = 4e-06
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Frame = +2
Query: 290 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 469
TF + L + GF+ P+PIQ P+ G D++ + +G+GKT+ + + A+
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 470 KLNL------NNGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGL 607
+N +G V++L PTRE+ I + G + N V GG+
Sbjct: 183 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNT-CVYGGV 233
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 45.6 bits (103), Expect = 6e-06
Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Frame = +2
Query: 290 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 469
+F+ + +S + + L + +P+ IQ + G + + AK+G+GKT F++ +E
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 470 KLNLN-NGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNEXIXKFXKKV 646
K + + +G+ +ILTPTRE+ I + +G+ + L ++GG+ + K+
Sbjct: 68 KWSKDPSGIFALILTPTRELAIQIDEQFAALGA-NLNLKHALIVGGMDMIRQSIDLSKRP 126
Query: 647 H 649
H
Sbjct: 127 H 127
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 44.0 bits (99), Expect = 2e-05
Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Frame = +2
Query: 347 FQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLN-LNNGL---QVMILTP 514
+++P+PIQ P G D++ A++G+GKTV F I AL+ LN L++ +V++++P
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 515 TREIXAXICDVIKQIGSHHKGLNVEXVM--GGLSVNE 619
TRE+ + + S +G N++ V+ GG +E
Sbjct: 245 TREL---AIQTYENLNSLIQGTNLKAVVVYGGAPKSE 278
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 43.6 bits (98), Expect = 3e-05
Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 7/100 (7%)
Frame = +2
Query: 332 LISSGFQKPSPIQLHGV-PLGKCGFDLLLEAKSGTGKTVVFSIIALE-----KLNLNNG- 490
L +GF+K +P+Q + + + +++AK+GTGKT+ F ++A + K LN+
Sbjct: 53 LSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSK 112
Query: 491 LQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLS 610
+ +IL+PTRE+ I + +++ ++ G+ V +GG S
Sbjct: 113 IHSVILSPTRELALQIFEEARKL-TYGTGIRVSYAIGGNS 151
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 43.6 bits (98), Expect = 3e-05
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +2
Query: 293 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTV--VFSIIAL 466
FTS L+ L + SG+ +P+P+Q + +P+ G DL+ A++G+GKT +F I++L
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL 230
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 38.7 bits (86), Expect = 7e-04
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +2
Query: 365 IQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLN--NGLQVMILTPTREIXAXI 538
IQ + +P DLL A +G+GKT+ + L+KL L+ G + +I+ PTRE+ I
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 38.7 bits (86), Expect = 7e-04
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Frame = +2
Query: 347 FQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVF---SIIALEKL------NLNNGLQV 499
+++PS IQ +P+ DL+ A++G+GKT F IIA+ KL N++ G
Sbjct: 269 YKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYA 328
Query: 500 MILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNEXIXKFXKKVH 649
++L PTRE+ I V + G V+GG + E + + H
Sbjct: 329 VVLAPTRELAQQI-QVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAH 377
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 33.9 bits (74), Expect = 0.020
Identities = 18/63 (28%), Positives = 39/63 (61%), Gaps = 8/63 (12%)
Frame = +2
Query: 404 DLLLEAKSGTGKTVVFSIIALEKL-----NLN---NGLQVMILTPTREIXAXICDVIKQI 559
D +EA++G+GKT+ + + +++L NL+ +G+ +I+ PTRE+ I +V ++
Sbjct: 180 DAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKL 239
Query: 560 GSH 568
++
Sbjct: 240 NNN 242
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 349 PKTISNSTSWCPTRQMWFRFVTRSKVWNWKNCCVFYNSIRKTKS 480
P T +SW P +Q + K+WN + CV +++I +S
Sbjct: 87 PPTFFLKSSWLPLKQKRVLTSSLIKLWNEIHDCVLFDAIEHVRS 130
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = +2
Query: 398 GFDLLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREI 526
GF +++ + +GK++++ I L+ L +N + PT+ +
Sbjct: 326 GFHVIVSTSTSSGKSLIYQIPILQSLLEDNQSTAFFVFPTKSL 368
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 392 KCGFDLLLEAKSGTGKTVVFSII 460
+CG ++L SGTGKT F+ +
Sbjct: 28 ECGLTIMLCGASGTGKTTFFNTL 50
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 407 LLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTP 514
++L K+G+GK+ +F I+ LN+ V +++P
Sbjct: 2170 IILLGKTGSGKSQIFRILQSALLNIGIDCIVYVISP 2205
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 410 LLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREIXAXICDVIKQI 559
+L+AK G+T+V I + E++ LN G VM L R + A C + ++
Sbjct: 28 ILQAKQ-LGETLVIGIHSDEEITLNKGPPVMTL-EERCLSANTCKWVDEV 75
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 227 SLAHDIRNSTRTRDVQIVENVTFTSMLLSEFTL 325
S DIRNST TR +++ T+ ++ E+ L
Sbjct: 378 SAVEDIRNSTATRIIEMTSKSTYMNIADFEWLL 410
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 450 NTTVFPVPDFASSNKSKPHLPS 385
NT +P F+S+ K KPHL S
Sbjct: 240 NTQEVVLPSFSSNAKPKPHLSS 261
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 389 GKCGFDLLLEAKSGTGKTV 445
GKCG+ +L + G GKT+
Sbjct: 225 GKCGYSAILADEMGLGKTL 243
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 404 DLLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREI 526
+LLL +G GKT + +++ L +++ L PT+ +
Sbjct: 126 NLLLALPTGLGKTFIAAVVMLNYFRWFPESKIIFLAPTKPL 166
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 289 NIFHYLNITSPCAVSYIMS*RHNGNSDSLLSLKSG*FDLRF 167
N+F + SP A+ +++ +GN D L G +DL F
Sbjct: 235 NVFRVADQPSPVAIHAMLTACQSGNIDVALEKLQGIWDLGF 275
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 377 GVPLGKCGFDLLLEAKSGTGKTVV 448
GV +G DL+L+A+ GT TVV
Sbjct: 233 GVVVGSKIIDLILKAEPGTAATVV 256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,619
Number of Sequences: 5004
Number of extensions: 50377
Number of successful extensions: 171
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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