Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C02
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0431 - 18152041-18152085,18152368-18152685,18152927-181534...    29   2.4  
10_08_0979 - 22000645-22000923,22000991-22001896                       29   3.2  
01_02_0016 - 10199085-10199170,10200649-10201456                       27   9.8  

>07_03_0431 -
           18152041-18152085,18152368-18152685,18152927-18153482,
           18153886-18154577,18155234-18155614,18156159-18156241,
           18156618-18156786,18157498-18157543,18158301-18158389,
           18158476-18158591,18159137-18159443
          Length = 933

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 6   IPALLRSSQTYALTHDTHTXNMSYEIAYSGRGRRSAASLAHLSISQSDE 152
           IPAL   S+TYA  H  +  N ++  A   +G ++ + LA    SQSD+
Sbjct: 272 IPALNVVSETYATNHGLNQVNANHFGALKHQGDQTQSLLASDVDSQSDQ 320


>10_08_0979 - 22000645-22000923,22000991-22001896
          Length = 394

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 522 SQPCSLDCFFIVWLREPIS 578
           S+PC LDC F+  L++P S
Sbjct: 359 SEPCHLDCIFLQMLQQPYS 377


>01_02_0016 - 10199085-10199170,10200649-10201456
          Length = 297

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 279 GTDRSPSSQAETPASLVTQPYRGCGSLQSWIYSRRXRS 392
           G D   + QA + ASL   P RG  +   W+YS+   S
Sbjct: 108 GDDDPRNPQAPSSASLPGTPDRGAPAPSPWMYSKEYAS 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,870,756
Number of Sequences: 37544
Number of extensions: 289990
Number of successful extensions: 690
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)