Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C01
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    41   1e-04
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    40   3e-04
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    40   3e-04
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    34   0.020
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    33   0.047
SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    25   7.2  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   9.5  

>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
 Frame = +2

Query: 161 KLAGRTLFITGASRXXXXXXXXXXXXXXX-NVVIAAKTAEPHPKLPGTIYTAAEEIEA-L 334
           +L G+T+ ITGAS                  +++AA+          T+   A+E+E+  
Sbjct: 3   RLDGKTILITGASSGIGKSTAFEIAKVAKVKLILAARRFS-------TVEEIAKELESKY 55

Query: 335 GGKALPCIVDVXXEKQVXKAVDEAVKKFNGIDILXNNAS-AISLTGTAQTDMKRYDLMHN 511
               LP  +DV   K +   ++   K+F  ID+L NNA  A+        ++     M  
Sbjct: 56  EVSVLPLKLDVSDLKSIPGVIESLPKEFADIDVLINNAGLALGTDKVIDLNIDDAVTMIT 115

Query: 512 INTXGTFLASXICLPVLKNSNHAHILNL 595
            N  G    +   LP+  + N   ILN+
Sbjct: 116 TNVLGMMAMTRAVLPIFYSKNKGDILNV 143


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 20/80 (25%), Positives = 38/80 (47%)
 Frame = +2

Query: 359 VDVXXEKQVXKAVDEAVKKFNGIDILXNNASAISLTGTAQTDMKRYDLMHNINTXGTFLA 538
           +DV     + K+V++A+  F  ID+L NNA     +    T  ++   + N N  G    
Sbjct: 21  LDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEV 80

Query: 539 SXICLPVLKNSNHAHILNLS 598
                P+ ++ ++  I+N+S
Sbjct: 81  IKAITPIFRSQHNGMIINVS 100


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 20/80 (25%), Positives = 38/80 (47%)
 Frame = +2

Query: 359 VDVXXEKQVXKAVDEAVKKFNGIDILXNNASAISLTGTAQTDMKRYDLMHNINTXGTFLA 538
           +DV     + K+V++A+  F  ID+L NNA     +    T  ++   + N N  G    
Sbjct: 21  LDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEV 80

Query: 539 SXICLPVLKNSNHAHILNLS 598
                P+ ++ ++  I+N+S
Sbjct: 81  IKAITPIFRSQHNGMIINVS 100


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +2

Query: 344 ALPCIVDVXXEKQVXKAVDEAVKKFNGIDILXNNASAISLTGTAQTDMKRYDLMHNINTX 523
           AL    DV    Q+  A+++ ++    ID+L NNA     T   Q   + +D   ++   
Sbjct: 47  ALALQADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLR 106

Query: 524 GTFLASXICLP-VLKNSNHAHILNL 595
           G +L     +P + K      I+N+
Sbjct: 107 GNYLTQRYVIPHMAKQGKGGSIVNI 131


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
 Frame = +2

Query: 311 AAEEIEALGGKALPCIVDVXXEKQVXKAVDEAVKKFNGIDILXNNASAISLTGTAQT-DM 487
           A + I     K L   +DV   K V  A  +A ++F  +DI+ NNA    L G  ++ ++
Sbjct: 38  APDTITIEHSKLLKLKLDVTDVKSVETAFKDAKRRFGNVDIVINNA-GYGLVGEFESYNI 96

Query: 488 KRYDLMHNINTXGTFLASXICLPVLKNSNH-AHILNLS 598
           +      N+N  G    +   L +++ S     IL +S
Sbjct: 97  EEMHRQMNVNFWGVAYITKEALNLMRESGKGGRILQIS 134


>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 269 TAEPHPKLPGTIYTAAEEIEAL 334
           T  PHP+L  T++     IEAL
Sbjct: 110 TYSPHPELEATVFQQEARIEAL 131


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -3

Query: 429 SMPLNFFTASSTAXCTCFSXXTSTMHGNAFPPRASISSAAV*IVPG-SLG*GSAVF 265
           S   +F    S    TCFS   + +    +PP ASI +    I P    G GS +F
Sbjct: 8   SCSFSFVVFVSVLLQTCFSFQLTPLSPKNYPPGASIDTTVNTISPFIGDGRGSDIF 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,920
Number of Sequences: 5004
Number of extensions: 39141
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)