Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B18
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.42 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   3.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   5.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   5.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   6.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   9.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   9.0  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 151 FNQQGNIYNLNSYTDSYXNSXR 86
           +N   N YN N+Y ++Y N+ +
Sbjct: 331 YNYNNNNYNNNNYNNNYNNNCK 352


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 148 NQQGNIYNLNSYTDSYXNSXR 86
           N   N  N N+Y ++Y N+ +
Sbjct: 329 NYNNNYNNYNNYNNNYNNNYK 349


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 3   LQTSFNYFVFSL 38
           +QT+ NY++FSL
Sbjct: 71  MQTATNYYLFSL 82


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 148 NQQGNIYNLNSYTDSYXN 95
           N   N YN N+Y   Y N
Sbjct: 312 NYSNNYYNNNNYKKLYYN 329


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 136 NIYNLNSYTDSYXN 95
           N YN N+Y ++Y N
Sbjct: 327 NNYNNNNYNNNYNN 340


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 105 ESVYELRL*MLPCWLN*QKMAQRF 176
           ESV+ + L  LPC L   K    F
Sbjct: 616 ESVHSMELRTLPCLLPRPKSENNF 639


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 105 ESVYELRL*MLPCWLN*QKMAQRF 176
           ESV+ + L  LPC L   K    F
Sbjct: 584 ESVHSMELRTLPCLLPRPKSENNF 607


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,327
Number of Sequences: 438
Number of extensions: 781
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)