Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B18
         (396 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07930.1 68418.m00918 RNA recognition motif (RRM)-containing ...    30   0.64 
At1g80030.3 68414.m09368 DNAJ heat shock protein, putative simil...    27   3.4  
At1g80030.2 68414.m09367 DNAJ heat shock protein, putative simil...    27   3.4  
At1g80030.1 68414.m09366 DNAJ heat shock protein, putative simil...    27   3.4  

>At5g07930.1 68418.m00918 RNA recognition motif (RRM)-containing
           protein similar to terminal ear1 [Zea mays] GI:3153237,
           SP|P08965 Meiosis protein mei2 {Schizosaccharomyces
           pombe}; contains Pfam profile: PF00076 RNA recognition
           motif (aka RRM, RBD, or RNP domain)
          Length = 282

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 229 PNKDTQGRSRRLPRRYHPDPTQDLT 303
           PN +    ++ LP+RY P+P+Q++T
Sbjct: 72  PNPNVYESTQELPQRYSPNPSQEMT 96


>At1g80030.3 68414.m09368 DNAJ heat shock protein, putative similar
           to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
           rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
           domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
           central domain (4 repeats)
          Length = 500

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 232 NKDTQGRSRRLPRRYHPDPTQD 297
           NK+ +   RRL R+YHPD  ++
Sbjct: 88  NKEIKAAYRRLARQYHPDVNKE 109


>At1g80030.2 68414.m09367 DNAJ heat shock protein, putative similar
           to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
           rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
           domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
           central domain (4 repeats)
          Length = 500

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 232 NKDTQGRSRRLPRRYHPDPTQD 297
           NK+ +   RRL R+YHPD  ++
Sbjct: 88  NKEIKAAYRRLARQYHPDVNKE 109


>At1g80030.1 68414.m09366 DNAJ heat shock protein, putative similar
           to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
           rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
           domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
           central domain (4 repeats)
          Length = 500

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 232 NKDTQGRSRRLPRRYHPDPTQD 297
           NK+ +   RRL R+YHPD  ++
Sbjct: 88  NKEIKAAYRRLARQYHPDVNKE 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,163,893
Number of Sequences: 28952
Number of extensions: 49528
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)