Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_B17
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 28 1.4
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 1.8
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 27 3.1
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 27 3.1
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 26 4.1
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 5.5
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 25 7.2
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 25 7.2
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 25 7.2
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 25 7.2
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 25 7.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 9.5
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 25 9.5
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 25 9.5
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 9.5
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.5
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -3
Query: 420 DAYGRPASTPRLFSCHIALMIGRVTVFGRELKTSCWR*YLNSSNVNSWD 274
D++ P +P+ S L + R+ ++G + + S + S V WD
Sbjct: 858 DSHSNPPVSPKYSSSQKHLKVERINIYGEQTRKSIKIRKIIDSEVTEWD 906
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 553 SEGCRTTTYRLVSSAS*T-KSARRQNILKSLKT-ESSPKTDLSLKRRRLRQTSQH 395
+EG + L +S S T K+ R Q+I + K E +P LSL R +R S+H
Sbjct: 418 NEGKIAADHPLFNSLSETDKTLRSQSIAQRKKLLEKNPTLHLSLNRLSIRNISRH 472
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 222 PMFAVSTFNLDLCTTSLFCNESNAYHIQFVTFFKRAVI 109
P ++ +TF + LC + + HI FV F + V+
Sbjct: 32 PTWSSTTFGIYLCLDCSAAHRNMGVHISFVRFLRSTVL 69
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -1
Query: 557 CFGRVQDYHISIGVVSVLNQVSEKTEYPEELENGVVSENRLV 432
CF + I+ V S++ + T PE+++ + +N L+
Sbjct: 162 CFPYTSRHEIATSVQSIVKMAEDGTITPEDIDEDIFEKNLLI 203
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 155 FDSLQNNDVVHKSKLKVLTANIGTLLDLYGVEKGLDHF 268
F+S +D+ K K K ++ G LLD VE L+ F
Sbjct: 514 FESFDIDDLCSKLKNKAKCSSSGVLLDERDVEAALNQF 551
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 460 TESSPKTDLSLKRRRLRQTSQHTSLIFLSYCPDDRQSYRLRQGTED 323
T +SPK SLK++R+ + I S P + + R +ED
Sbjct: 24 TPTSPKPKRSLKKKRIVLSDDEDGTIENSKVPASKSKVQKRNESED 69
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 258 RPFSTPYRSSRVPMFAVSTFNLDLCTTSLFCNESN 154
+PF +P R + P A + L T+L +E+N
Sbjct: 105 KPFKSPLRQTASPQVADTNLKPSLAVTNLNSDETN 139
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 356 AELPSSAGN*RLRAGDSI*TRRMSTPGMT*SGPDLFPRRTGQVG 225
AE+P + R + + + +R GM G D+ PRR Q+G
Sbjct: 22 AEVPDTFEENRGHSFEGVTLQRRHVKGMKSYGSDITPRRPKQLG 65
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 7.2
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -2
Query: 523 LVSSAS*TKS-ARRQNILKSLKTESSPKTDLSLKRRRLRQTSQHTSLIFLSYCPDDRQSY 347
+ S+ S KS R NI T P + + +R RL + ++F + PD R++
Sbjct: 246 IASTGSACKSDPTRVNIADISATSEDPLSRATRRRLRLLGIMEGIPVVFSTEKPDPRKAS 305
Query: 346 RLRQGTEDFVLEIVFEL 296
L E+F V EL
Sbjct: 306 LLPLSEEEFEKGDVDEL 322
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 186 CTTSLFCNESNAYHIQFVTFFK 121
CT + N SNA ++ F T FK
Sbjct: 284 CTAYVSTNSSNAKNVTFATIFK 305
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 207 STFNLDLCTTSLFCNESNAYHIQFVTFFKRA 115
+ +N DL + S FC+ SN Y + TF K A
Sbjct: 175 AVYNYDLPSESTFCHPSNGY-TEVSTFNKPA 204
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/74 (18%), Positives = 33/74 (44%)
Frame = +2
Query: 110 MTALLKNVTNCIWYAFDSLQNNDVVHKSKLKVLTANIGTLLDLYGVEKGLDHFRSSQELT 289
+ +++ ++ C+W Q+N+ +H+S +++L G +Y G D +
Sbjct: 876 LDSIMPDLLICLWNHSRLNQSNNQLHQSAVRILGKMGGRNRQIYLGTFGFDFLQDENIFP 935
Query: 290 FDEFKYYLQHEVFS 331
+F + + FS
Sbjct: 936 SIQFSFQGSSQNFS 949
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 9.5
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -2
Query: 634 EEPRASQSAASQRRPRQWTSCSATIPASEGCRTTTYRLVSSAS*TKSARRQNILKSLKTE 455
E +S+ + S S S++ + TTT VS+ S T S + S+K E
Sbjct: 291 ESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEEST-SVKDE 349
Query: 454 SSPKT-DLSLKRR 419
S K D SLKR+
Sbjct: 350 DSSKIHDKSLKRK 362
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 328 QFPAEDGNSAYHQGNMTRK*ARCAGWSA 411
+F E GN +HQ + R+ A+ W A
Sbjct: 260 EFHYEQGNLGFHQRQLAREQAKIQQWIA 287
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 528 YVVVLHPSEAGIVAEQL-VHCLGLRWDAADWEALGSSIGH 644
Y VVLHP G V E L +H G A + +G + H
Sbjct: 901 YRVVLHPEHEGAVVEFLDIHDAGKASLALEGHEIGGRLLH 940
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -2
Query: 535 TTYRLVSSAS*TKSARRQNILKSLKTESSPKTDLSLKRRRLRQTSQ 398
T RL A+ S ++ LKSL+++SSP L LK + + +Q
Sbjct: 276 TQKRLRRLATLESSPALRSTLKSLQSKSSPVKLLKLKEEKAKIKNQ 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,871
Number of Sequences: 5004
Number of extensions: 56342
Number of successful extensions: 165
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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