Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_B17
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0035 - 14321699-14321751,14321800-14321914,14322136-143221... 35 0.065
08_01_0048 + 335868-336682,338382-340386 32 0.35
01_03_0306 + 14875755-14876822 32 0.35
05_03_0635 - 16446805-16447716 30 1.4
11_03_0193 - 11437237-11437533,11438834-11439643 29 2.4
06_03_1168 - 28114656-28114721,28114800-28114889,28115139-281168... 29 3.2
04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103 29 4.3
12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014... 28 7.5
09_06_0126 + 21014388-21014792 28 7.5
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33... 27 9.9
05_06_0150 - 25994562-25995980 27 9.9
04_03_0768 - 19396146-19396607,19397855-19398175,19398424-193995... 27 9.9
>10_08_0035 -
14321699-14321751,14321800-14321914,14322136-14322199,
14322221-14322238,14323433-14323524,14323580-14323601,
14324345-14324424,14324882-14325082
Length = 214
Score = 34.7 bits (76), Expect = 0.065
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 235 PVRRGKRSGPLQVIPGVDIRRVQILSPARSLQFP 336
P RRGK G + V+P + + +LSPA L +P
Sbjct: 45 PARRGKSGGDVSVLPAALVHQFMLLSPALKLLYP 78
>08_01_0048 + 335868-336682,338382-340386
Length = 939
Score = 32.3 bits (70), Expect = 0.35
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +2
Query: 113 TALLKNVTNCIWYAFDSLQNNDVVHKSKLKVLTANIGTLLDLYGVEKGLDHFRSSQELTF 292
T L K V + I + FD V HK + + ++I + LD+ G + D Q+L
Sbjct: 206 TTLAKYVYDKIGHQFDCTAFVSVSHKPDITRILSSIQSKLDIGGTSQACD---DVQQL-I 261
Query: 293 DEFKYYLQHE 322
D+ + YL+HE
Sbjct: 262 DDIRAYLEHE 271
>01_03_0306 + 14875755-14876822
Length = 355
Score = 32.3 bits (70), Expect = 0.35
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = -3
Query: 372 IALMIGRVTVFGRELKTSCWR*YLNSSNVNSWDDLKWSRPFSTPYRSSRVPMFAVSTFNL 193
I+++ GR V G + T+C+ S+NVNSW W ++PYR S A +TF +
Sbjct: 76 ISVVYGRSRVLG-SITTNCYNSSTGSANVNSW----WMDLSTSPYRFSD----AYNTFVV 126
Query: 192 DLCTT 178
C T
Sbjct: 127 IGCNT 131
>05_03_0635 - 16446805-16447716
Length = 303
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -2
Query: 643 WPMEEPRASQSAASQRRPRQWTSCSATIPASEG--CR 539
W EE + A ++ PR WT+ S +P G CR
Sbjct: 23 WSPEEDEQLRGAVARHGPRNWTAISEEVPGRSGKSCR 59
>11_03_0193 - 11437237-11437533,11438834-11439643
Length = 368
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 450 DDSVFKLFRIFCLLADLVQDADDTNRYVVVLHPSEA-GIVAEQLVHCLGLRWDAADW 617
D ++L + CLL D DD +V HPS+ ++A HC+ ADW
Sbjct: 94 DTGTYRLTPLSCLLV----DGDDDGAAIVDGHPSQVPTVLAMGSRHCVEAAMGLADW 146
>06_03_1168 - 28114656-28114721,28114800-28114889,28115139-28116877,
28117146-28117227,28117794-28117865,28119412-28119453,
28120352-28120401,28121253-28121372,28121635-28121707,
28121828-28122100,28122413-28122517,28122730-28122859,
28123106-28123356,28123787-28123993,28124185-28124455,
28124808-28124914
Length = 1225
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 501 VQDADDTNRYVVVLHPSEAGIVAEQLV 581
+QD D+ NR + +L P+E +VA+ L+
Sbjct: 1109 IQDGDNLNRLLQLLDPAEGKLVAKDLI 1135
>04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103
Length = 301
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -3
Query: 618 PSQRHPSADRGSGPVVPPRFLLRKGAGLPHIDWCRQR---LEPSQRED 484
P P D G GP++PP + G+ +W RQ LE +R++
Sbjct: 83 PFSPDPELDGGDGPILPPPAQMGAEEGILLREWRRQNAIVLEEKERKE 130
>12_02_1091 - 26001129-26001181,26001292-26001325,26001339-26001437,
26002327-26002369,26002389-26002494,26002776-26002818,
26003526-26003579,26003831-26003911,26003997-26004119,
26004197-26004846,26004928-26005554,26005633-26005870,
26006082-26006258,26006373-26006723,26006824-26007111,
26008340-26008462,26008551-26009007,26009115-26009263,
26009466-26009489
Length = 1239
Score = 27.9 bits (59), Expect = 7.5
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Frame = -2
Query: 586 QWTSCSATIPASEGCRTTTYRLVSSAS*TKSARRQNILKSLKTESSPKTDLSLKRRRLRQ 407
+W + SE + YR+ S S A N+LKS + + S +K R L
Sbjct: 959 EWRDWARNATPSERAQVRGYRVRSILS----APENNVLKSSQVKGSSARTNRVKLRNLLA 1014
Query: 406 TSQHTSLIFLSYCPDDRQSYRLRQG--------------TEDFVLEIVFELVECQL 281
++ T L+ + ++ R ++ EDFV+E V EL+ Q+
Sbjct: 1015 AAEGTDLLKIMQSKSRKKRLRFQRSKIHEWGLVALESIDAEDFVIEYVGELIRRQV 1070
>09_06_0126 + 21014388-21014792
Length = 134
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = -2
Query: 622 ASQSAASQRRPRQWTSCSATIPASEGCRTTTYRLVSSAS*TKSARRQNILKSLKTESSPK 443
+S S+++ PR +C+AT A E T ++ +R +L L ++PK
Sbjct: 48 SSSSSSTTSSPRSVNTCAATTAAGEEIEEFTGMAAEMELDRRARKRYRLLSELYAATAPK 107
>07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-335368,
336239-336536,337030-337131,337245-337613,337973-338115,
338334-338518,339246-339475,339734-339821,340158-340253,
340397-340512,340604-340852,340950-341175,341411-341622
Length = 962
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 646 KWPMEEPRASQSAASQRRPRQWTSCSATIPAS 551
KW EE R Q + ++ P +W S S+ P +
Sbjct: 926 KWEAEERRPHQLSHHRKHPSKWRSSSSPDPVT 957
>05_06_0150 - 25994562-25995980
Length = 472
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 639 LWKNRGPPSQRHPSADRGSGPVVPPRFLLR-KGAGLPHIDWCRQ 511
LW R PP ++ S + ++P FL R KG G+ +W Q
Sbjct: 299 LWTVRSPPEEQSTSPEPDLERLLPAGFLERTKGRGMVVKNWVPQ 342
>04_03_0768 -
19396146-19396607,19397855-19398175,19398424-19399569,
19400073-19400855,19402114-19402149
Length = 915
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -1
Query: 620 LPVSGIPAQTEAVDQLFRHDSCFGRVQDYHISIGVVSVLNQVSEKTEYPEELE-NGVVSE 444
L V+GIP ++ + L H FG+V D +I Q S++ E L+ V
Sbjct: 473 LYVNGIPLESNRWEALLSHFQKFGQVIDIYIPSNSEKAFVQFSKREEAEAALKAPDAVMG 532
Query: 443 NRLV 432
NR +
Sbjct: 533 NRFI 536
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,259,694
Number of Sequences: 37544
Number of extensions: 391730
Number of successful extensions: 1303
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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