Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B17
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54854| Best HMM Match : LepA_C (HMM E-Value=5.1)                    33   0.27 
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)                 33   0.27 
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 32   0.35 
SB_15540| Best HMM Match : DUF29 (HMM E-Value=1.3)                     31   1.1  
SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12)           30   1.4  
SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24)              30   1.4  
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_15786| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_9897| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_737| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-35)                   29   3.3  
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 29   4.4  
SB_15273| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29)                    28   5.8  
SB_5549| Best HMM Match : PT (HMM E-Value=1.9)                         28   7.6  

>SB_54854| Best HMM Match : LepA_C (HMM E-Value=5.1)
          Length = 372

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
 Frame = -2

Query: 652 HLKWPMEEPRASQSAASQRRPRQWTSCSATIPASEGCRTTTYRLVSSAS*------TKSA 491
           +L +P    R+S   A + R  QW     TIPA+EG   T  R V S S       T S+
Sbjct: 129 YLSFPQRYVRSS--LAVEARLSQWRK--ETIPATEGHIVTQGRGVQSRSAQGSKAGTPSS 184

Query: 490 RRQNILKSLKTESSPKTDLSLKRRR 416
            R+ ILK     S+PKT     R R
Sbjct: 185 MRKGILKQGDESSAPKTRRRQSRER 209


>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
          Length = 360

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = -2

Query: 640 PMEEPRASQSAASQRRPRQWTSCSATIPASEGCRTTTYRLVSSAS*TKSARRQNILKSLK 461
           P   P+ S  ++ +  P+  TS   +   S      T R  S  +  K + + +   SLK
Sbjct: 150 PKRSPKTSSKSSPKTSPK--TSLKTSSKTSPKTSLNTSRKTSRKTSLKRSLKTSTKTSLK 207

Query: 460 TESSPKTDLSLKRR--RLRQTSQHTSL 386
           T  +   ++SLK R    R+TS  TSL
Sbjct: 208 TNPTTSPEISLKTRWKTSRKTSPKTSL 234


>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 550  EGCRTTTYRLVSSAS*TKSARRQNILKSLKTESSPKTDLSLKRRRLR 410
            +GC+      ++SA+ TKS RR  I+K+   E   K  L  +RR  +
Sbjct: 943  KGCKELIDNFLNSATSTKSRRRSGIIKAKPVEEFTKLKLPSRRRETK 989


>SB_15540| Best HMM Match : DUF29 (HMM E-Value=1.3)
          Length = 150

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 540 LHPSEAGIVAEQLVHCLGLRWDAADWE 620
           +H  E GI+ E+LVH +G  WD+   E
Sbjct: 29  VHKQELGILLEKLVHAIGKVWDSKPLE 55


>SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12)
          Length = 353

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/111 (19%), Positives = 50/111 (45%)
 Frame = -2

Query: 637 MEEPRASQSAASQRRPRQWTSCSATIPASEGCRTTTYRLVSSAS*TKSARRQNILKSLKT 458
           ++ P AS +    R     ++ + T P ++   T T +  +S+       R+N  + +KT
Sbjct: 122 IQAPTASVTTEKSRTSEDSSNRNCTTPINQSTTTVTVKNETSSD------RKNSNQPIKT 175

Query: 457 ESSPKTDLSLKRRRLRQTSQHTSLIFLSYCPDDRQSYRLRQGTEDFVLEIV 305
             +  T ++L+ R ++ ++  T  +  S  P+   +  L   T + V  ++
Sbjct: 176 PCAESTPIALENRLVKTSAVTTPQVSHSTTPNQTTAQGLTNSTRNPVCSVM 226


>SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24)
          Length = 398

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/111 (19%), Positives = 50/111 (45%)
 Frame = -2

Query: 637 MEEPRASQSAASQRRPRQWTSCSATIPASEGCRTTTYRLVSSAS*TKSARRQNILKSLKT 458
           ++ P AS +    R     ++ + T P ++   T T +  +S+       R+N  + +KT
Sbjct: 167 IQAPTASVTTEKSRTSEDSSNRNCTTPINQSTTTVTVKNETSSD------RKNSNQPIKT 220

Query: 457 ESSPKTDLSLKRRRLRQTSQHTSLIFLSYCPDDRQSYRLRQGTEDFVLEIV 305
             +  T ++L+ R ++ ++  T  +  S  P+   +  L   T + V  ++
Sbjct: 221 PCAESTPIALENRLVKTSAVTTPQVSHSTTPNQTTAQGLTNSTRNPVCSVM 271


>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 518 HQSICGSPAPFRSRNRGGTTGPLPR 592
           H+  CG PA +  R RG    P+P+
Sbjct: 87  HRLFCGQPAKYNHRKRGSDVYPIPK 111


>SB_15786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -2

Query: 631 EPRASQSAASQRRPRQWTSCSATIPASEGCRTTT-YRLVS-SAS*TKSARRQNILKSLKT 458
           EP   + + +      +T    T P+ E   TTT  R+VS SA  T S +      +LK 
Sbjct: 255 EPTPVEKSIADAESVIFTPTQVTAPSPENINTTTSSRIVSASARSTSSKKLSKSSSNLKQ 314

Query: 457 ESS-PKTDLSLK 425
           +S  PK DL+ K
Sbjct: 315 KSELPKRDLAAK 326


>SB_9897| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/76 (28%), Positives = 34/76 (44%)
 Frame = -2

Query: 628 PRASQSAASQRRPRQWTSCSATIPASEGCRTTTYRLVSSAS*TKSARRQNILKSLKTESS 449
           P  + SA      RQ      T P S  C   T + V +   T   R++ + +  +T+S+
Sbjct: 201 PHQTDSALCTDSTRQTVRTVQTSPDSAHCTDLTRQTVRTVQ-TSPDRQRALYRLHQTDSA 259

Query: 448 PKTDLSLKRRRLRQTS 401
             TDL+ +  R  QTS
Sbjct: 260 HFTDLTRQTARTVQTS 275



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/76 (28%), Positives = 34/76 (44%)
 Frame = -2

Query: 628 PRASQSAASQRRPRQWTSCSATIPASEGCRTTTYRLVSSAS*TKSARRQNILKSLKTESS 449
           P  + SA      RQ      T P S  C   T + V +   T   R++ + +  +T+S+
Sbjct: 381 PHQTDSALCTDSTRQTVRTVQTSPDSAHCTDLTRQTVRTVQ-TSPDRQRALYRLHQTDSA 439

Query: 448 PKTDLSLKRRRLRQTS 401
             TDL+ +  R  QTS
Sbjct: 440 HFTDLTRQTARTVQTS 455


>SB_737| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-35)
          Length = 432

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 378 KKISEVCWLVCRKRLLFRDKSVFG-DDSVFKLFRIFCLLADLVQDADDTNRYVVVLHPSE 554
           K IS +  L+    LLF    + G  D  FK  +  CL+     ++DD N Y +VL  + 
Sbjct: 203 KTISVIILLIWVLPLLFSVPPLLGWSDYAFKPSKCICLV-----ESDDFNSYGIVLGCAT 257

Query: 555 AGIVAEQLVHC 587
            GI    ++ C
Sbjct: 258 LGINVPLIIFC 268


>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
 Frame = -2

Query: 640 PMEEPRASQSAA--SQRRPRQWTSCSATIPASEGCRTTTYRLVSSAS*TKSARRQNILKS 467
           P    + SQ  +  + R+  + TS   ++  S      T R+ S  +  K++   +   S
Sbjct: 318 PKTSRKTSQKTSLNASRKTSRKTSLKRSLKTSPKTSPKTMRMKSLKTSPKTSPEISPRTS 377

Query: 466 LKTES--SPKTDLSLKRRRLRQTSQHTSL--IFLSYCPDDRQSYRLRQGTED 323
            KT S  SPKT L         TSQ TSL     +  P D+   +L    ED
Sbjct: 378 PKTSSKTSPKTSLKTSLNTSLNTSQKTSLKRSLNTNKPGDKSKDKLEVKPED 429


>SB_15273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 479 YPEELENGVVSENRLVPKEE 420
           +PEE+ NG+++E RL P  E
Sbjct: 4   FPEEIVNGLITERRLAPAPE 23


>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -1

Query: 512 SVLNQV-SEKTEY-PEELENGVVSENRLVPKE 423
           SV+ Q+ SE  +Y PE+ E+  VSE R+VPK+
Sbjct: 43  SVIKQMKSELGDYDPEDQEDNYVSEFRIVPKQ 74


>SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29)
          Length = 1239

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 237 RSSRVPMFAVSTFNLDLCTTSLFCNESNAYHIQFVTFFKRAVIFHKL 97
           +SSRV M  V    +  C T LFC+ +N  +  F+      ++ HK+
Sbjct: 742 KSSRV-MSDVELSKIKDCLTRLFCDPNNKVYSAFLDALCEFIVVHKV 787


>SB_5549| Best HMM Match : PT (HMM E-Value=1.9)
          Length = 282

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = -2

Query: 532 TYRLVSSAS*TKSARRQNILKSLKTESSPKTDLSLKRRRLRQTSQHTSL 386
           T R  SS +  K++ +    KS KT  +PKT L   R+   +TS+ TSL
Sbjct: 15  TSRKTSSKTSLKTSPKTRRKKSPKT--TPKTSLKTSRKTSLKTSRKTSL 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,093,107
Number of Sequences: 59808
Number of extensions: 449200
Number of successful extensions: 1208
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)