Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B17
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z99171-4|CAB16313.1|  722|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF016684-8|AAB66211.1|  302|Caenorhabditis elegans Hypothetical ...    28   6.7  
AL117202-8|CAB57891.1|  547|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
            F20C5.2b protein.
          Length = 1130

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = -2

Query: 538  TTTYRLVSSAS*TKSARRQNILKSLKTESSPKTDLSLKRRRLRQTSQHTSLIFLSYCPDD 359
            ++ +RL +SAS T S++ Q +L S     +      L RR     SQ +S + L+     
Sbjct: 950  SSPFRLSTSASATSSSQHQRLLTSSSIHVASSYSRLLPRRPQWVRSQPSSSVQLAESTVS 1009

Query: 358  RQSYRLRQGTEDFVLE 311
              S+ L     +F L+
Sbjct: 1010 LDSFELMNTKSNFYLD 1025


>Z99171-4|CAB16313.1|  722|Caenorhabditis elegans Hypothetical
           protein F47G4.4 protein.
          Length = 722

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -2

Query: 619 SQSAASQRRPRQWTSCSATIPASEGCRTTTYRLVSSAS*TKSARRQNILKSLKTESSPKT 440
           S S +  RRP    +   + P+     ++  +  SS +   +ARRQN   S+ + +S KT
Sbjct: 492 SSSTSRNRRPSPSVAKKTSPPSIYAITSSPAKRASSTASGPTARRQNSTSSVTSTTSAKT 551

Query: 439 DLSL 428
            + +
Sbjct: 552 PVGV 555


>AF016684-8|AAB66211.1|  302|Caenorhabditis elegans Hypothetical
           protein F45C12.13 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = +2

Query: 194 KLKVLTANIGTLLD-LYGVEKGLDHFRSSQELTFDEFKYYLQHEVFSSLPKTVTLPIIRA 370
           K  +L+ NI   L+ L           +++ LT  +F  +L+H +    P+   + I+  
Sbjct: 168 KFPILSLNINMPLNGLLLTSSSSVGVNNNRLLTSKDFNIFLKHWIAGLKPELECIRILDY 227

Query: 371 I*QENKRGVLAGLP-*ASPL*GQVGFRRRLRFQ 466
               N+  VL G+P   +P+  ++ FRR+   Q
Sbjct: 228 RLDWNEHTVLKGIPYEVAPMETKIKFRRKEELQ 260


>AL117202-8|CAB57891.1|  547|Caenorhabditis elegans Hypothetical
           protein Y47D3A.11 protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 528 YVVVLHPSEAGIVAEQLVHCLGLRWDAADWEALGSSI 638
           Y +V  PS+ G+   Q+  C+ + W+ A   ALG ++
Sbjct: 388 YFLVGFPSDFGVFLRQIFTCMAIEWNVA---ALGIAV 421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,484,828
Number of Sequences: 27780
Number of extensions: 332313
Number of successful extensions: 1092
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)