Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B17
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    29   0.039
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   3.4  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   3.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 0.039
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +2

Query: 119 LLKNVTNCIWYAFDSLQNNDVVHKSKLKVLTANIGTLLDLYGVEKGLDHFRSSQEL 286
           L  NVT       D   NND+  K     ++A +  L DLY V+  LD +  S E+
Sbjct: 359 LFSNVTPKFPRNIDEYNNNDLDTKKWNNKISA-LRALNDLYNVKNTLDSYNGSMEI 413


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 471 FRIFCLLADLVQDADDTNR 527
           +RI CLL+   Q+ D+T R
Sbjct: 65  YRISCLLSIFKQEFDETER 83


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 471 FRIFCLLADLVQDADDTNR 527
           +RI CLL+   Q+ D+T R
Sbjct: 33  YRISCLLSIFKQEFDETER 51


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 140 CIWYAFDSLQNNDVVHKSKLKVLTANIGTLLD 235
           C W+ F+  Q     HK   + ++   GT+ D
Sbjct: 605 CCWHCFNCTQYQIRDHKDVTQCISCRQGTVPD 636


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 116 QSFFTN*KLKRHQIKHY 66
           +SF  N  LK HQ+ HY
Sbjct: 239 KSFGYNHVLKLHQVAHY 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,402
Number of Sequences: 438
Number of extensions: 4272
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)