Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B13
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.7  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   4.0  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   7.0  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   9.3  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 308 TI*NYAITITVVLCNFRXXYVIDNVVFFK 222
           +I N+ I+I V+  NFR  Y +DN+   K
Sbjct: 193 SIENFGISIHVITKNFREYYKLDNIEHVK 221


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 10  NLFVFIGSLIYFXNWCY 60
           ++FV + SL  F NWC+
Sbjct: 495 DMFVLVASLTLFVNWCW 511


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 10  NLFVFIGSLIYFXNWCY*NYDEVIHIPRFYSCISLVRFARKWIFLFFYIAMHN 168
           NL + + +  +   WC       + +PR+      VR  R W FL FY  ++N
Sbjct: 103 NLMLQVLAPCFVLLWC------AVPMPRYEDSQGTVRI-RFWFFLIFYYGIYN 148


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
 Frame = +1

Query: 376 WQKDDQYEKQLADSISKLLPLQH-------GSKAIPISSLLYKSFTTLKDLXTLXEQYSG 534
           +Q  D   K L+++ + +L  +H        ++ I ISS  ++ + T KD+  L E Y  
Sbjct: 128 FQNTDDASKALSEAQNTILDGRHIRIERAKVNRTIRISSAPHQPYITKKDIDNLLEPYGE 187

Query: 535 IVQVXD 552
           +  V +
Sbjct: 188 VEDVTE 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,610
Number of Sequences: 5004
Number of extensions: 44535
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)