Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B13
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14090| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.60 
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)                       29   3.2  

>SB_14090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 368 YVHGKKTINTKNNWPIPYLNCYHYSTVQKL 457
           Y HG+K I + + W +PY +C  YS  Q L
Sbjct: 93  YSHGQKPITSPSEWTVPY-HCSLYSNTQYL 121


>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 2065

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 481  KSFTTLKDLXTLXEQYSGIVQVXDSYHKLXSYYARLXSVLLS 606
            + F TL+DL    E+YS    V D +H    + A+   +LLS
Sbjct: 1081 QGFITLRDLFRWAERYSKTPDVGDGFHDWEHHLAQDGYMLLS 1122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,805,493
Number of Sequences: 59808
Number of extensions: 306257
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)