Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B13
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w...    30   1.6  
AF039048-10|AAB94240.2|  421|Caenorhabditis elegans Hypothetical...    29   2.8  
AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine re...    28   4.9  
AF039049-1|AAB94253.1|  299|Caenorhabditis elegans Serpentine re...    28   6.5  

>U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w)
           trna synthetaseprotein 2, isoform a protein.
          Length = 650

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
 Frame = +1

Query: 346 VAQPAEVLRAWQKDDQYEKQLADSISKLLPLQHGSKA----IP----ISSLLYKSFTTLK 501
           VA+  E++R+ ++D++Y + + + +S++     G +      P    I+S LY + T + 
Sbjct: 5   VAEIGEIVRSQRRDEEYIEDITERLSRVSKELLGQRTWIRWFPYLKSIASTLYYTSTVVL 64

Query: 502 DLXTLXEQYSGIVQVXDSYHKLXSYYARLXSVLL 603
              TL E+Y  + +       + S  +R+  VLL
Sbjct: 65  GNQTLGEEYVHLFESNGLERTVPSIPSRISFVLL 98


>AF039048-10|AAB94240.2|  421|Caenorhabditis elegans Hypothetical
           protein F16B4.9 protein.
          Length = 421

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 362 KFYVHGKKTINTKN--NWPIPYLNCYHYSTVQKLFQYPLCFINHLQP 496
           K+YV  K  I+     NWP+P++      ++Q +F+     + +L+P
Sbjct: 276 KYYVTPKLKIDISKVTNWPVPFMGGIFRRSIQNMFEQTGVPLAYLEP 322


>AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 33 protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 96  LFVYKFSTFCTQVDFFIFLYCNA*QTXILLNFIAVMFDYQIY 221
           LF Y+F    T   F  FL+CN   T + +NF   M +Y  +
Sbjct: 43  LFYYRF---LTDTCFGTFLFCNIVYTILSMNFPEFMVNYNSF 81


>AF039049-1|AAB94253.1|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein68 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 13  LFVFIGSL--IYFXNWCY*NYDEVIHIPRF 96
           +++FIGS+  +++  +CY  YDE  H   F
Sbjct: 126 MWIFIGSIAVLFYQKFCYLYYDEATHFFTF 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,788,665
Number of Sequences: 27780
Number of extensions: 242722
Number of successful extensions: 534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)