Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B13
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.47 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   1.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +1

Query: 325 HEKMALPVAQPAEVLRAWQKDDQYEKQLADSISKLLPLQHGSKAIPISSLLYKSF 489
           H++      + AEVLR      Q ++   D +S +  L  G   +P    L +SF
Sbjct: 96  HQRSLSSFLKTAEVLRVSGLTQQADQTDRDELSHVRALAAGGNHLPFHEKLVESF 150


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 368 YVHGKKTINTKNNWPIPYLNC-YHYST 445
           YV+   T +  N W  P   C Y++ST
Sbjct: 283 YVYEDSTYDDINQWVYPLTGCLYYFST 309


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 387 VFLPCT*NFSRLCYWQSHLF 328
           +F P    F  L YW ++LF
Sbjct: 421 IFFPIVFAFFNLAYWSTYLF 440


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 387 VFLPCT*NFSRLCYWQSHLF 328
           +F P    F  L YW ++LF
Sbjct: 421 IFFPIVFAFFNLAYWSTYLF 440


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 383 KTINTKNNWPIPYLNCYHYS 442
           KTI+  NN+   Y N Y+Y+
Sbjct: 88  KTIHNNNNYKYNYNNKYNYN 107


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 383 KTINTKNNWPIPYLNCYHYSTVQKLFQYPLCFINHL 490
           KTI+  NN+   Y N  + +  +KL+ Y + +I  +
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLY-YNINYIEQI 122


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 383 KTINTKNNWPIPYLNCYHYSTVQKLFQYPLCFINHL 490
           KTI+  NN+   Y N  + +  +KL+ Y + +I  +
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLY-YNINYIEQI 122


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 383 KTINTKNNWPIPYLNCYHYSTVQKLFQYPLCFINHL 490
           KTI+  NN+   Y N  + +  +KL+ Y + +I  +
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLY-YNINYIEQI 122


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 550 DSYHKLXSYYARLXSVLLSTFGENLT 627
           DS+H+L S+     S  +S   ENLT
Sbjct: 219 DSFHRLSSHTLNHNSDKMSDQQENLT 244


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 554 LSXTWTIPEYCSXRVCRSFKVVNDL*SKEDIGIAF 450
           L  TW  PEY   RV ++     D+ S+    I F
Sbjct: 340 LQNTWLDPEYPMIRVHKTQSQTIDIYSRIGFPILF 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,513
Number of Sequences: 438
Number of extensions: 3335
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)