Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B13
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr...    36   0.017
At1g28510.1 68414.m03505 expressed protein                             28   4.6  
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains...    27   8.0  

>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
           protein (PEX10) identical to zinc-binding peroxisomal
           integral membrane protein GI:4337011 from [Arabidopsis
           thaliana]
          Length = 381

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
 Frame = +1

Query: 343 PVAQPAEVLRAWQKDDQY----EKQLADSISKL----LPLQHGSKAIPISSLLYKSFTTL 498
           P+A   E++RA +KDDQY     +   D+   L    + L +  +   +  +LY   TT 
Sbjct: 27  PLAAQPEIMRAAEKDDQYASFIHEACRDAFRHLFGTRIALAYQKEMKLLGQMLYYVLTTG 86

Query: 499 KDLXTLXEQYSGIVQVXDSY 558
               TL E+Y  I+QV   Y
Sbjct: 87  SGQQTLGEEYCDIIQVAGPY 106


>At1g28510.1 68414.m03505 expressed protein
          Length = 171

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +1

Query: 352 QPAEVLRAWQKDDQYEKQLADSISKLLPLQHGSKAIPISSL 474
           Q  E LR   KD++ EKQ+AD  SKL  L+  +KA  +S +
Sbjct: 114 QELEELRI--KDEELEKQVADLKSKLEELEQLAKARGLSGI 152


>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family; similar to
           mitochondrial sorting protein 1 (MSP1) (TAT-binding
           homolog 4) (Swiss-Prot:P28737) [Saccharomyces
           cerevisiae]
          Length = 1252

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +1

Query: 340 LPVAQPAEVLRAWQKDDQYEKQLADSISKLLPLQHGSKAIPISSLLYKSFTTLKDLXTLX 519
           LP A P  +L      + Y++ LA +++K    Q G+K + + SLL    +T K+  T  
Sbjct: 485 LPTACPRILLSGPSGSEIYQEMLAKALAK----QCGAKLMIVDSLLLPGGSTPKEADTTK 540

Query: 520 E 522
           E
Sbjct: 541 E 541


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,586,609
Number of Sequences: 28952
Number of extensions: 208204
Number of successful extensions: 347
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)