Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_B12
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 127 1e-30
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 31 0.11
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 30 0.25
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 29 0.44
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 2.4
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 27 3.1
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 26 5.5
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 26 5.5
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 5.5
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 25 7.2
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 7.2
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 127 bits (307), Expect = 1e-30
Identities = 73/185 (39%), Positives = 109/185 (58%), Gaps = 4/185 (2%)
Frame = +2
Query: 110 LKDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSKETQLKT 289
LK+F EKIL ++T K + GK +++ VAL+L EK AF N + + + K
Sbjct: 12 LKEFKFEKILKDDTKSKIITLYGKIRNE--VALLLLEKTAFDLNTIKLDQLATFLQDTKL 69
Query: 290 FFENDIYGNFEC--FPP-STINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTL 460
ND++ F F ST+ VK+T+I+PA++ H+ K+S Q+ +V ETPE+Y K+T
Sbjct: 70 VENNDVFHWFLSTNFQDCSTLPSVKSTLIWPASETHVRKYSSQKKRMVCETPEMYLKVTK 129
Query: 461 PHLEKEQF-NLQWVYNILXGKSXQXRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIV 637
P +E ++ +QWV NIL K+ RIV ++ GF+++PDLKWD T L L+AIV
Sbjct: 130 PFIETQRGPQIQWVENILTHKAEAERIVVEDPDPLNGFIVIPDLKWDRQTMSALNLMAIV 189
Query: 638 RQRDI 652
DI
Sbjct: 190 HATDI 194
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 31.5 bits (68), Expect = 0.11
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +2
Query: 65 LTMKTATTLNDNQLELKD---FVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFK 235
L ++ + + N +LKD FVLE+ L N KT G+ K+GV L+ K +
Sbjct: 412 LRLEQSEGIPRNIQDLKDHPLFVLERHLKKNQAIKTGKSCGRINTKNGVELVYPRK--YV 469
Query: 236 ENDLSEEGYFSKETQLK 286
N S E ++ K +K
Sbjct: 470 SNGFSAEHWYRKGRIIK 486
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 30.3 bits (65), Expect = 0.25
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 302 DIYGNFECFPPSTINGVKTTIIYPATDKHIAKFS 403
D+Y ++ S INGV ++IYPA + I+K S
Sbjct: 34 DVYRSYISSELSKINGVDVSLIYPALETSISKDS 67
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 29.5 bits (63), Expect = 0.44
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 237 SLKAFFSNRISATPLLSLNFPTTQAVFLLVLLFNIFS 127
S+K FF A+PL ++NFP A+F+ N+FS
Sbjct: 268 SMKKFFRFLCLASPLFTMNFP--MAIFMYWFPSNVFS 302
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 329 PPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTL-PHLEKEQFNL 490
PPS +N +T + + + + K++++++ + PE + L L P+ E + F +
Sbjct: 725 PPSQVNFSETLVNFSQPPRVLLKYNEKKLSLDSSAPENWISLCLQPYGESKDFEV 779
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 255 SSLRSFSLKA-FFSNRISATPLLSLNFPTTQAVF 157
S L++++++ FFSN S+ L +FPT ++ F
Sbjct: 133 SKLQAYTMRTNFFSNGFSSNDLFPHSFPTWKSAF 166
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 268 QRNSAENVFRERYLRKLRVFPAFDYKR 348
+R SA + R+R++RK+RV D +R
Sbjct: 156 ERRSAMDGLRDRHIRKVRVSQLLDLQR 182
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 137 IFSPKQSLSILTDCHLELLPFSLSIFN--LLQRCSL 36
I +Q S+L DCH E+L +L FN LL+ C L
Sbjct: 75 IIKNEQLGSVLHDCHAEIL--ALRCFNRLLLEHCIL 108
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 355 FHTVYSRRRETLEVSVNIVLEKRFQLSFFGEI 260
FH + ++RET+ V+ N + + FFGEI
Sbjct: 704 FHQQWDKQRETISVAENDLRICQKARKFFGEI 735
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 428 ETPELYKKLTLPHLEKEQFNLQWVYNILXGK 520
+ P Y LTLP+L E+ LQ++ + G+
Sbjct: 253 DLPPAYSTLTLPNLPSEE-GLQFIQKVFKGE 282
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 116 LSILTDCHLELLPFSLSIFNLLQRCSLTSSFR 21
LS L + H EL+ ++N + C+L F+
Sbjct: 268 LSCLKNTHQELIKLETEVYNATKNCTLFQFFQ 299
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,415
Number of Sequences: 5004
Number of extensions: 58730
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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